Detailed information NTG0439093

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG571_RS00215
• Genome accession: NZ_CP051496
• Coordinates: 37323..38459 (+)
• Length: 378 a.a.
• NCBI ID: WP_202140760.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-008
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 32323..43459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG571_RS00180 (HG571_00180)	panD	32787..33137 (+)	351	WP_202140758.1	aspartate 1-decarboxylase	-
HG571_RS00185 (HG571_00185)	-	33148..33441 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HG571_RS00190 (HG571_00190)	-	33441..34448 (+)	1008	WP_202141218.1	PDZ domain-containing protein	-
HG571_RS00195 (HG571_00195)	comB6	34456..35511 (+)	1056	WP_202141217.1	P-type conjugative transfer protein TrbL	Machinery gene
HG571_RS00200 (HG571_00200)	comB7	35527..35640 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HG571_RS00205 (HG571_00205)	comB8	35637..36380 (+)	744	WP_000660502.1	virB8 family protein	Machinery gene
HG571_RS00210 (HG571_00210)	comB9	36380..37330 (+)	951	WP_202140759.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG571_RS00215 (HG571_00215)	comB10	37323..38459 (+)	1137	WP_202140760.1	DNA type IV secretion system protein ComB10	Machinery gene
HG571_RS00220 (HG571_00220)	-	38529..39941 (+)	1413	WP_202140761.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG571_RS00225 (HG571_00225)	gmd	39969..41114 (+)	1146	WP_202140762.1	GDP-mannose 4,6-dehydratase	-
HG571_RS00230 (HG571_00230)	-	41107..42039 (+)	933	WP_001002452.1	GDP-L-fucose synthase	-
HG571_RS00235 (HG571_00235)	hypE	42312..43310 (-)	999	WP_202140763.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42079.67 Da
• Isoelectric Point: 9.9837

>NTDB_id=439093 HG571_RS00215 WP_202140760.1 37323..38459(+) (comB10) [Helicobacter pylori strain PUNO-008]
MNKWLKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPTIDLKTSTTSPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=439093 HG571_RS00215 WP_202140760.1 37323..38459(+) (comB10) [Helicobacter pylori strain PUNO-008]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTACCATAGATTTAAAAAC
AAGCACAACCTCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTATTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.503	100	0.955