Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HG572_RS07220 | Genome accession | NZ_CP051495 |
| Coordinates | 1527162..1527737 (+) | Length | 191 a.a. |
| NCBI ID | WP_202139660.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PUNO-009 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1522162..1532737
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG572_RS07195 (HG572_07185) | uvrD | 1522853..1524898 (+) | 2046 | WP_202139657.1 | DNA helicase UvrD | - |
| HG572_RS07200 (HG572_07190) | flgA | 1524895..1525551 (+) | 657 | WP_202139658.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HG572_RS07205 (HG572_07195) | - | 1525561..1526124 (+) | 564 | WP_000780095.1 | UbiX family flavin prenyltransferase | - |
| HG572_RS07210 (HG572_07200) | coaD | 1526124..1526597 (+) | 474 | WP_202139659.1 | pantetheine-phosphate adenylyltransferase | - |
| HG572_RS07215 (HG572_07205) | tmk | 1526599..1527174 (+) | 576 | WP_202137972.1 | dTMP kinase | - |
| HG572_RS07220 (HG572_07210) | comFC | 1527162..1527737 (+) | 576 | WP_202139660.1 | ComF family protein | Machinery gene |
| HG572_RS07225 (HG572_07215) | - | 1527771..1529810 (+) | 2040 | Protein_1426 | N-6 DNA methylase | - |
| HG572_RS07230 (HG572_07220) | - | 1529807..1531060 (+) | 1254 | WP_202139661.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21295.84 Da Isoelectric Point: 8.6823
>NTDB_id=439085 HG572_RS07220 WP_202139660.1 1527162..1527737(+) (comFC) [Helicobacter pylori strain PUNO-009]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=439085 HG572_RS07220 WP_202139660.1 1527162..1527737(+) (comFC) [Helicobacter pylori strain PUNO-009]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACTTTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACATCAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACTTTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACATCAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |