Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG573_RS07210 Genome accession   NZ_CP051494
Coordinates   1539986..1540561 (+) Length   191 a.a.
NCBI ID   WP_202147261.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-010     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1534986..1545561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG573_RS07185 (HG573_07190) uvrD 1535677..1537722 (+) 2046 WP_202147257.1 DNA helicase UvrD -
  HG573_RS07190 (HG573_07195) flgA 1537719..1538375 (+) 657 WP_202147258.1 flagellar basal body P-ring formation chaperone FlgA -
  HG573_RS07195 (HG573_07200) - 1538385..1538948 (+) 564 WP_039704959.1 UbiX family flavin prenyltransferase -
  HG573_RS07200 (HG573_07205) coaD 1538948..1539421 (+) 474 WP_202147259.1 pantetheine-phosphate adenylyltransferase -
  HG573_RS07205 (HG573_07210) tmk 1539423..1539998 (+) 576 WP_202147260.1 dTMP kinase -
  HG573_RS07210 (HG573_07215) comFC 1539986..1540561 (+) 576 WP_202147261.1 ComF family protein Machinery gene
  HG573_RS07215 (HG573_07220) - 1540600..1542042 (-) 1443 WP_078245266.1 hypothetical protein -
  HG573_RS07220 (HG573_07225) - 1542105..1543244 (-) 1140 WP_078245267.1 DNA methyltransferase -
  HG573_RS07225 (HG573_07230) - 1543248..1544255 (-) 1008 WP_001210998.1 DNA adenine methylase -
  HG573_RS07230 (HG573_07235) - 1544252..1544491 (-) 240 WP_000777862.1 helix-turn-helix domain-containing protein -
  HG573_RS08175 - 1544637..1544720 (+) 84 Protein_1424 type II restriction endonuclease -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21262.85 Da        Isoelectric Point: 9.0940

>NTDB_id=439061 HG573_RS07210 WP_202147261.1 1539986..1540561(+) (comFC) [Helicobacter pylori strain PUNO-010]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439061 HG573_RS07210 WP_202147261.1 1539986..1540561(+) (comFC) [Helicobacter pylori strain PUNO-010]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGCGTTTAAGGGCGACTAACGCTGTTTCATATGCCGGTAAAAGCCTGG
AATTTCGCGCCAATAACCCACGAAATTTCACTTTCAAGGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.335

100

0.963
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366