NTDB

Overview

Name	comGB	Type	Machinery gene
Locus tag	HGO96_RS04595	Genome accession	NZ_CP051484
Coordinates	942211..943281 (-)	Length	356 a.a.
NCBI ID	WP_054190027.1	Uniprot ID	-
Organism	Staphylococcus aureus strain NGA71
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 937211..948281

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGO96_RS04555 (HGO96_07820)	gcvPA	937388..938734 (-)	1347	WP_054190021.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-
HGO96_RS04560 (HGO96_07825)	gcvT	938754..939845 (-)	1092	WP_054190022.1	glycine cleavage system aminomethyltransferase GcvT	-
HGO96_RS04565 (HGO96_07830)	-	940004..940528 (-)	525	WP_054190023.1	shikimate kinase	-
HGO96_RS04570 (HGO96_07835)	-	940518..940664 (-)	147	WP_001789879.1	hypothetical protein	-
HGO96_RS04575 (HGO96_07840)	comGF	940761..941258 (-)	498	WP_077446653.1	competence type IV pilus minor pilin ComGF	Machinery gene
HGO96_RS04580 (HGO96_07845)	comGE	941176..941475 (-)	300	WP_054190024.1	hypothetical protein	Machinery gene
HGO96_RS04585 (HGO96_07850)	comGD	941462..941908 (-)	447	WP_077446655.1	competence type IV pilus minor pilin ComGD	Machinery gene
HGO96_RS04590 (HGO96_07855)	comGC	941886..942197 (-)	312	WP_054190026.1	competence type IV pilus major pilin ComGC	Machinery gene
HGO96_RS04595 (HGO96_07860)	comGB	942211..943281 (-)	1071	WP_054190027.1	competence type IV pilus assembly protein ComGB	Machinery gene
HGO96_RS04600 (HGO96_07865)	comGA	943253..944227 (-)	975	WP_054191886.1	competence type IV pilus ATPase ComGA	Machinery gene
HGO96_RS04605 (HGO96_07870)	-	944279..944902 (-)	624	WP_054190028.1	MBL fold metallo-hydrolase	-
HGO96_RS04610 (HGO96_07875)	-	944899..945228 (-)	330	WP_001018871.1	MTH1187 family thiamine-binding protein	-
HGO96_RS04615 (HGO96_07880)	-	945228..946214 (-)	987	WP_000161315.1	ROK family glucokinase	-
HGO96_RS04620 (HGO96_07885)	-	946211..946414 (-)	204	WP_000087561.1	YqgQ family protein	-
HGO96_RS04625 (HGO96_07890)	-	946395..947858 (-)	1464	WP_054190029.1	rhomboid family intramembrane serine protease	-

Sequence

Protein

Download Length: 356 a.a. Molecular weight: 41579.02 Da Isoelectric Point: 10.1371

                                >NTDB_id=438907 HGO96_RS04595 WP_054190027.1 942211..943281(-) (comGB) [Staphylococcus aureus strain NGA71]

MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLATTILSEISNGAPCNQILSLIG

YNDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS

SFQKTLSIFITSLPTIIVVMLIIVSMLAIIMKFIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ

SIVDVYINHSSDPFRQFLGKFLLTYSEMGYSLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVRQIEDKAIK

QTQFLQPILFFILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide

Download Length: 1071 bp

                                >NTDB_id=438907 HGO96_RS04595 WP_054190027.1 942211..943281(-) (comGB) [Staphylococcus aureus strain NGA71]

GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT

TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA

AAAATAAGCAATTAGCTACCACCATTCTGAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT

TATAACGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA

TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA

TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT

TCTTTTCAAAAAACATTGTCTATTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT

GGCTATTATTATGAAATTTATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTTATAT

CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA

TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTTTAGGTAAATTCTTATTAACTTATTCGGA

AATGGGATATAGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATAAAGTTTGTGCTGCAAGGTG

AAAAGAGAGGGAAACTAGAAGTAGAACTAAAGTTATATTCACAAATATTAGTGAGACAAATAGAGGATAAAGCGATAAAA

CAGACTCAGTTTTTACAGCCTATTTTATTTTTTATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC

AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGB	Staphylococcus aureus MW2	97.472	100	0.975
comGB	Staphylococcus aureus N315	97.472	100	0.975

Detailed information NTG0438907