Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   HGO96_RS04580 Genome accession   NZ_CP051484
Coordinates   941176..941475 (-) Length   99 a.a.
NCBI ID   WP_054190024.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA71     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 936176..946475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGO96_RS04555 (HGO96_07820) gcvPA 937388..938734 (-) 1347 WP_054190021.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  HGO96_RS04560 (HGO96_07825) gcvT 938754..939845 (-) 1092 WP_054190022.1 glycine cleavage system aminomethyltransferase GcvT -
  HGO96_RS04565 (HGO96_07830) - 940004..940528 (-) 525 WP_054190023.1 shikimate kinase -
  HGO96_RS04570 (HGO96_07835) - 940518..940664 (-) 147 WP_001789879.1 hypothetical protein -
  HGO96_RS04575 (HGO96_07840) comGF 940761..941258 (-) 498 WP_077446653.1 competence type IV pilus minor pilin ComGF Machinery gene
  HGO96_RS04580 (HGO96_07845) comGE 941176..941475 (-) 300 WP_054190024.1 hypothetical protein Machinery gene
  HGO96_RS04585 (HGO96_07850) comGD 941462..941908 (-) 447 WP_077446655.1 competence type IV pilus minor pilin ComGD Machinery gene
  HGO96_RS04590 (HGO96_07855) comGC 941886..942197 (-) 312 WP_054190026.1 competence type IV pilus major pilin ComGC Machinery gene
  HGO96_RS04595 (HGO96_07860) comGB 942211..943281 (-) 1071 WP_054190027.1 competence type IV pilus assembly protein ComGB Machinery gene
  HGO96_RS04600 (HGO96_07865) comGA 943253..944227 (-) 975 WP_054191886.1 competence type IV pilus ATPase ComGA Machinery gene
  HGO96_RS04605 (HGO96_07870) - 944279..944902 (-) 624 WP_054190028.1 MBL fold metallo-hydrolase -
  HGO96_RS04610 (HGO96_07875) - 944899..945228 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  HGO96_RS04615 (HGO96_07880) - 945228..946214 (-) 987 WP_000161315.1 ROK family glucokinase -
  HGO96_RS04620 (HGO96_07885) - 946211..946414 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11067.12 Da        Isoelectric Point: 9.9215

>NTDB_id=438904 HGO96_RS04580 WP_054190024.1 941176..941475(-) (comGE) [Staphylococcus aureus strain NGA71]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTSVSKINKEELKKGVTIGKYDIKQSDQ
QICATSKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=438904 HGO96_RS04580 WP_054190024.1 941176..941475(-) (comGE) [Staphylococcus aureus strain NGA71]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTAATCACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGTCTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAATATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTACTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

85.088

100

0.98
  comGE Staphylococcus aureus N315

96.97

100

0.97