Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   HGO96_RS01465 Genome accession   NZ_CP051484
Coordinates   294080..295066 (+) Length   328 a.a.
NCBI ID   WP_054190362.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA71     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 289080..300066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGO96_RS01440 (HGO96_04705) opp4B 289247..290209 (+) 963 WP_054190365.1 oligopeptide ABC transporter permease -
  HGO96_RS01445 (HGO96_04710) opp4C 290221..291102 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  HGO96_RS01450 (HGO96_04715) trpS 291190..292179 (-) 990 WP_054190364.1 tryptophan--tRNA ligase -
  HGO96_RS01455 (HGO96_04720) spxA 292474..292869 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  HGO96_RS01460 (HGO96_04725) mecA 293240..293959 (+) 720 WP_054190363.1 adaptor protein MecA -
  HGO96_RS01465 (HGO96_04730) coiA 294080..295066 (+) 987 WP_054190362.1 competence protein CoiA family protein Machinery gene
  HGO96_RS01470 (HGO96_04735) pepF 295114..296922 (+) 1809 WP_221918202.1 oligoendopeptidase F -
  HGO96_RS01475 (HGO96_04740) yjbH 297382..298188 (-) 807 WP_054190361.1 protease adaptor protein YjbH -
  HGO96_RS01480 (HGO96_04745) - 298211..298576 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  HGO96_RS01485 (HGO96_04750) - 298680..299273 (-) 594 WP_054190360.1 CYTH domain-containing protein -
  HGO96_RS01490 (HGO96_04755) - 299459..299806 (+) 348 WP_054190359.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38854.26 Da        Isoelectric Point: 9.3244

>NTDB_id=438896 HGO96_RS01465 WP_054190362.1 294080..295066(+) (coiA) [Staphylococcus aureus strain NGA71]
MLVALNEEKERVLATTALRKTQYFCPMCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
DIEPFLKEIKQIPDILINNKYVIELQYSPIPYKEILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFDLENKQIYKFHQLQSLGGNKYFAYKTKDCISELFNETPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLNDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=438896 HGO96_RS01465 WP_054190362.1 294080..295066(+) (coiA) [Staphylococcus aureus strain NGA71]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACGCAATATTTTTGTCCGAT
GTGTGGGAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GATATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAAGAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGGTATAAAGTGAGTTGGTTATTAA
ATGATGTTGATTACTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAACCCAATCACTCGAAAACTT
CATACGTTTGATTTAGAAAATAAGCAAATATATAAATTTCATCAATTACAAAGTTTAGGCGGCAATAAGTATTTTGCGTA
TAAGACGAAAGACTGTATTAGTGAGTTGTTTAATGAGACGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATTAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAACAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

92.378

100

0.924
  coiA Staphylococcus aureus N315

92.378

100

0.924