Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HGO93_RS13495 Genome accession   NZ_CP051482
Coordinates   2735351..2735746 (+) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain NGA104a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2730351..2740746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGO93_RS13465 (HGO93_10985) - 2731610..2732014 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  HGO93_RS13470 (HGO93_10980) - 2732352..2732444 (+) 93 WP_031864518.1 hypothetical protein -
  HGO93_RS13475 (HGO93_10975) - 2732576..2732809 (+) 234 WP_000384523.1 DUF1146 family protein -
  HGO93_RS13480 (HGO93_10970) murA 2732920..2734185 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  HGO93_RS13485 (HGO93_10965) fabZ 2734219..2734659 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  HGO93_RS13490 (HGO93_10960) - 2734717..2735157 (-) 441 WP_000846746.1 YwpF-like family protein -
  HGO93_RS13495 (HGO93_10955) ssb 2735351..2735746 (+) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  HGO93_RS13500 (HGO93_10950) sceD 2736135..2736830 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  HGO93_RS13505 (HGO93_10945) tenA 2737354..2738043 (+) 690 WP_000396077.1 thiaminase II -
  HGO93_RS13510 (HGO93_10940) thiD 2738036..2738866 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HGO93_RS13515 (HGO93_10935) thiM 2738850..2739650 (+) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  HGO93_RS13520 (HGO93_10930) thiE 2739643..2740284 (+) 642 WP_000483155.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=438849 HGO93_RS13495 WP_000932692.1 2735351..2735746(+) (ssb) [Staphylococcus aureus strain NGA104a]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=438849 HGO93_RS13495 WP_000932692.1 2735351..2735746(+) (ssb) [Staphylococcus aureus strain NGA104a]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992