Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   HF085_RS05135 Genome accession   NZ_CP051479
Coordinates   1035285..1035854 (+) Length   189 a.a.
NCBI ID   WP_103148468.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA76     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1030285..1040854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF085_RS05100 (HF085_04975) - 1031498..1031770 (-) 273 WP_001790097.1 lactococcin 972 family bacteriocin -
  HF085_RS05105 (HF085_04970) - 1031780..1031881 (-) 102 WP_001790623.1 hypothetical protein -
  HF085_RS05110 (HF085_04965) - 1032427..1032546 (-) 120 WP_020978111.1 hypothetical protein -
  HF085_RS05115 (HF085_04960) - 1032798..1033400 (-) 603 WP_001033867.1 CPBP family glutamic-type intramembrane protease -
  HF085_RS05120 (HF085_04955) - 1033415..1033591 (-) 177 WP_000214898.1 YkvS family protein -
  HF085_RS05125 (HF085_04950) - 1033790..1034776 (+) 987 WP_000668820.1 lipoate--protein ligase -
  HF085_RS05130 (HF085_04945) - 1034857..1035075 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  HF085_RS05135 (HF085_04940) comK/comK1 1035285..1035854 (+) 570 WP_103148468.1 competence protein ComK Regulator
  HF085_RS05150 (HF085_04925) - 1036341..1037852 (-) 1512 WP_103148467.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  HF085_RS05155 (HF085_04920) - 1037991..1039349 (-) 1359 WP_000021869.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22661.93 Da        Isoelectric Point: 9.6091

>NTDB_id=438786 HF085_RS05135 WP_103148468.1 1035285..1035854(+) (comK/comK1) [Staphylococcus aureus strain NGA76]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNFIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=438786 HF085_RS05135 WP_103148468.1 1035285..1035854(+) (comK/comK1) [Staphylococcus aureus strain NGA76]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTTCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995