Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HC658_RS17960 Genome accession   NZ_CP051466
Coordinates   3486559..3487248 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain UCMB5021     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3481559..3492248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC658_RS17925 (HC658_35310) flgN 3481740..3482222 (-) 483 WP_032722609.1 flagellar protein FlgN -
  HC658_RS17930 (HC658_35320) flgM 3482238..3482504 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  HC658_RS17935 (HC658_35330) yvyF 3482585..3483004 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  HC658_RS17940 (HC658_35340) comFC 3483077..3483799 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  HC658_RS17945 (HC658_35350) comFB 3483763..3484059 (-) 297 WP_015483764.1 late competence protein ComFB -
  HC658_RS17950 (HC658_35360) comFA 3484119..3485510 (-) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  HC658_RS17955 (HC658_35370) fakBA 3485616..3486461 (-) 846 WP_003244125.1 DegV family protein -
  HC658_RS17960 (HC658_35380) degU 3486559..3487248 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HC658_RS17965 (HC658_35390) degS 3487331..3488488 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  HC658_RS17970 (HC658_35400) yvyE 3488705..3489358 (+) 654 WP_003227979.1 YigZ family protein -
  HC658_RS17975 (HC658_35410) tagV 3489358..3490533 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  HC658_RS17980 (HC658_35420) tagO 3490606..3491682 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=438681 HC658_RS17960 WP_003219701.1 3486559..3487248(-) (degU) [Bacillus subtilis subsp. subtilis strain UCMB5021]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=438681 HC658_RS17960 WP_003219701.1 3486559..3487248(-) (degU) [Bacillus subtilis subsp. subtilis strain UCMB5021]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1