Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HC658_RS17940 Genome accession   NZ_CP051466
Coordinates   3483077..3483799 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5021     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3478077..3488799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC658_RS17905 (HC658_35270) fliW 3478217..3478648 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  HC658_RS17910 (HC658_35280) yviE 3478669..3479244 (-) 576 WP_003243053.1 DUF6470 family protein -
  HC658_RS17915 (HC658_35290) flgL 3479291..3480187 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  HC658_RS17920 (HC658_35300) flgK 3480198..3481721 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  HC658_RS17925 (HC658_35310) flgN 3481740..3482222 (-) 483 WP_032722609.1 flagellar protein FlgN -
  HC658_RS17930 (HC658_35320) flgM 3482238..3482504 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  HC658_RS17935 (HC658_35330) yvyF 3482585..3483004 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  HC658_RS17940 (HC658_35340) comFC 3483077..3483799 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  HC658_RS17945 (HC658_35350) comFB 3483763..3484059 (-) 297 WP_015483764.1 late competence protein ComFB -
  HC658_RS17950 (HC658_35360) comFA 3484119..3485510 (-) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  HC658_RS17955 (HC658_35370) fakBA 3485616..3486461 (-) 846 WP_003244125.1 DegV family protein -
  HC658_RS17960 (HC658_35380) degU 3486559..3487248 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HC658_RS17965 (HC658_35390) degS 3487331..3488488 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=438679 HC658_RS17940 WP_014481051.1 3483077..3483799(-) (comFC) [Bacillus subtilis subsp. subtilis strain UCMB5021]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=438679 HC658_RS17940 WP_014481051.1 3483077..3483799(-) (comFC) [Bacillus subtilis subsp. subtilis strain UCMB5021]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992