Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HC659_RS12125 Genome accession   NZ_CP051465
Coordinates   2393083..2393418 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2388083..2398418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS12105 (HC659_23930) gcvT 2388675..2389763 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  HC659_RS12110 (HC659_23940) hepAA 2390205..2391878 (+) 1674 WP_029726726.1 SNF2-related protein -
  HC659_RS12115 (HC659_23950) yqhG 2391899..2392693 (+) 795 WP_015714249.1 YqhG family protein -
  HC659_RS12120 (HC659_23960) sinI 2392876..2393049 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  HC659_RS12125 (HC659_23970) sinR 2393083..2393418 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  HC659_RS12130 (HC659_23980) tasA 2393511..2394296 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  HC659_RS12135 (HC659_23990) sipW 2394360..2394932 (-) 573 WP_072692741.1 signal peptidase I SipW -
  HC659_RS12140 (HC659_24000) tapA 2394916..2395677 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  HC659_RS12145 (HC659_24010) yqzG 2395949..2396275 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  HC659_RS12150 (HC659_24020) spoIITA 2396317..2396496 (-) 180 WP_029726723.1 YqzE family protein -
  HC659_RS12155 (HC659_24030) comGG 2396568..2396942 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  HC659_RS12160 (HC659_24040) comGF 2396943..2397326 (-) 384 WP_032722118.1 ComG operon protein ComGF Machinery gene
  HC659_RS12165 (HC659_24050) comGE 2397352..2397699 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  HC659_RS12170 (HC659_24060) comGD 2397683..2398114 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  HC659_RS12175 (HC659_24070) comGC 2398104..2398400 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=438571 HC659_RS12125 WP_003226345.1 2393083..2393418(+) (sinR) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=438571 HC659_RS12125 WP_003226345.1 2393083..2393418(+) (sinR) [Bacillus subtilis subsp. subtilis strain UCMB5121]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1