Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   IPV46_RS28375 Genome accession   NZ_CP063388
Coordinates   6099551..6100075 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain ST1076_d100blood1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6094551..6105075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV46_RS28360 (IPV46_28345) aroB 6095667..6096773 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  IPV46_RS28365 (IPV46_28350) aroK 6096823..6097341 (-) 519 WP_003095833.1 shikimate kinase AroK -
  IPV46_RS28370 (IPV46_28355) pilQ 6097353..6099497 (-) 2145 WP_031686163.1 type 4a pilus secretin PilQ Machinery gene
  IPV46_RS28375 (IPV46_28360) comL/pilP 6099551..6100075 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IPV46_RS28380 (IPV46_28365) pilO 6100072..6100695 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  IPV46_RS28385 (IPV46_28370) pilN 6100692..6101288 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  IPV46_RS28390 (IPV46_28375) pilM 6101288..6102352 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IPV46_RS28395 (IPV46_28380) - 6102537..6105008 (+) 2472 WP_031686164.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=438558 IPV46_RS28375 WP_003095836.1 6099551..6100075(-) (comL/pilP) [Pseudomonas aeruginosa strain ST1076_d100blood1]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=438558 IPV46_RS28375 WP_003095836.1 6099551..6100075(-) (comL/pilP) [Pseudomonas aeruginosa strain ST1076_d100blood1]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGTGGCGGTTCCGATTTCGCCGACCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTTGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362