Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HC660_RS17910 Genome accession   NZ_CP051464
Coordinates   3426731..3427420 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus mojavensis strain UCMB5075     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3421731..3432420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS17875 (HC660_34270) flgN 3421912..3422394 (-) 483 WP_168748865.1 flagellar protein FlgN -
  HC660_RS17880 (HC660_34280) flgM 3422409..3422675 (-) 267 WP_010332065.1 flagellar biosynthesis anti-sigma factor FlgM -
  HC660_RS17885 (HC660_34290) - 3422756..3423175 (-) 420 WP_168748866.1 TIGR03826 family flagellar region protein -
  HC660_RS17890 (HC660_34300) comFC 3423249..3423971 (-) 723 WP_168748867.1 double zinc ribbon domain-containing protein Machinery gene
  HC660_RS17895 (HC660_34310) - 3423935..3424231 (-) 297 WP_010332068.1 competence protein ComFB -
  HC660_RS17900 (HC660_34320) comFA 3424288..3425682 (-) 1395 WP_168748868.1 ATP-dependent helicase ComFA Machinery gene
  HC660_RS17905 (HC660_34330) - 3425789..3426634 (-) 846 WP_168748869.1 DegV family protein -
  HC660_RS17910 (HC660_34340) degU 3426731..3427420 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HC660_RS17915 (HC660_34350) degS 3427503..3428660 (-) 1158 WP_010332072.1 two-component sensor histidine kinase DegS Regulator
  HC660_RS17920 (HC660_34360) - 3428877..3429530 (+) 654 WP_010332073.1 YigZ family protein -
  HC660_RS17925 (HC660_34370) - 3429530..3430696 (+) 1167 WP_010332074.1 LCP family protein -
  HC660_RS17930 (HC660_34380) - 3430772..3431848 (-) 1077 WP_010332075.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=438516 HC660_RS17910 WP_003219701.1 3426731..3427420(-) (degU) [Bacillus mojavensis strain UCMB5075]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=438516 HC660_RS17910 WP_003219701.1 3426731..3427420(-) (degU) [Bacillus mojavensis strain UCMB5075]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTGAAGCGGATATTGGATTTCGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCGATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTGATTGAAGCAGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAGGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1