Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HC660_RS17900 Genome accession   NZ_CP051464
Coordinates   3424288..3425682 (-) Length   464 a.a.
NCBI ID   WP_168748868.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3419288..3430682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS17865 (HC660_34250) flgL 3419464..3420360 (-) 897 WP_010332062.1 flagellar hook-associated protein FlgL -
  HC660_RS17870 (HC660_34260) flgK 3420370..3421893 (-) 1524 WP_168748864.1 flagellar hook-associated protein FlgK -
  HC660_RS17875 (HC660_34270) flgN 3421912..3422394 (-) 483 WP_168748865.1 flagellar protein FlgN -
  HC660_RS17880 (HC660_34280) flgM 3422409..3422675 (-) 267 WP_010332065.1 flagellar biosynthesis anti-sigma factor FlgM -
  HC660_RS17885 (HC660_34290) - 3422756..3423175 (-) 420 WP_168748866.1 TIGR03826 family flagellar region protein -
  HC660_RS17890 (HC660_34300) comFC 3423249..3423971 (-) 723 WP_168748867.1 double zinc ribbon domain-containing protein Machinery gene
  HC660_RS17895 (HC660_34310) - 3423935..3424231 (-) 297 WP_010332068.1 competence protein ComFB -
  HC660_RS17900 (HC660_34320) comFA 3424288..3425682 (-) 1395 WP_168748868.1 ATP-dependent helicase ComFA Machinery gene
  HC660_RS17905 (HC660_34330) - 3425789..3426634 (-) 846 WP_168748869.1 DegV family protein -
  HC660_RS17910 (HC660_34340) degU 3426731..3427420 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HC660_RS17915 (HC660_34350) degS 3427503..3428660 (-) 1158 WP_010332072.1 two-component sensor histidine kinase DegS Regulator
  HC660_RS17920 (HC660_34360) - 3428877..3429530 (+) 654 WP_010332073.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52982.03 Da        Isoelectric Point: 9.8448

>NTDB_id=438515 HC660_RS17900 WP_168748868.1 3424288..3425682(-) (comFA) [Bacillus mojavensis strain UCMB5075]
MQTKTSESNSLFSKELQQQLQSRHLLRTEISFSDEIIDWHTEHGYISAEESLSKNKRGYRCNRCGQNDQQYFSSYHSFGK
DKVYCRSCVMMGRVSEDVSLYSWSKEAEANWKPMKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IELALNLKQRVCIATPRTDVVLELAPRLKAAFRGADISALYGGSEDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLIRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISILEEAASCFKNMNYRTASVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=438515 HC660_RS17900 WP_168748868.1 3424288..3425682(-) (comFA) [Bacillus mojavensis strain UCMB5075]
ATGCAGACTAAGACATCAGAATCGAACAGTCTATTCTCTAAAGAACTGCAGCAGCAGCTCCAGAGCCGTCATCTGCTTAG
AACAGAAATCTCATTTTCTGACGAGATCATTGATTGGCATACCGAGCATGGTTATATATCTGCCGAGGAGTCATTATCCA
AAAATAAACGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCATCGTATCATTCATTTGGAAAA
GATAAAGTTTACTGCCGCTCTTGTGTCATGATGGGCAGGGTGAGTGAGGATGTTTCTTTATATTCTTGGAGTAAGGAGGC
AGAGGCAAACTGGAAGCCTATGAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCAGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGTGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATTGGCATTAAATCTAAAACAGCGTGTTTGTATTGCGACCCCACGCACCGATGTTGTATTAGAGCTTGCTCCGAG
GCTGAAGGCTGCATTTCGAGGTGCTGATATTTCAGCTCTATACGGAGGAAGTGAGGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACGCTTGTTTATCTAAGCGCCAC
ACCTCCTAAAGAATTAAAAAGAAAAACATATAAAGGTGAGTTGAAGTCCGTTCGCATACCGGCCAGATACCACCGGAAGC
CGTTGCCTGAACCGCGCTTTCAATGGTGCGGAAACTGGAAAAAGAAATTAATCCGAAATAAGATCCCAAATGCGGTAAAA
AGATGGATAGAGCAGCATGTAAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCATCCATTTCTATTCTGGAAGAGGCTGC
TTCTTGCTTTAAAAATATGAATTATCGAACAGCGTCTGTACATGCGGAAGACAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTAGAAAGGGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGCCGGCATAAAGAACA
TGCAGACGGTGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAACATATCAAAATAATGA
ATGAATTGGCTTTGAAAAATAAGTTGATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(121-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.498

98.707

0.834