Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HC660_RS12060 Genome accession   NZ_CP051464
Coordinates   2317797..2319527 (-) Length   576 a.a.
NCBI ID   WP_168748212.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2312797..2324527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS12035 - 2313188..2313322 (+) 135 WP_168748207.1 hypothetical protein -
  HC660_RS12040 (HC660_23010) - 2313395..2314513 (+) 1119 WP_168748208.1 NADH-dependent flavin oxidoreductase -
  HC660_RS12045 - 2314752..2314931 (-) 180 WP_168748209.1 hypothetical protein -
  HC660_RS12050 (HC660_23020) spo0A 2315080..2315883 (-) 804 WP_168748210.1 sporulation transcription factor Spo0A Regulator
  HC660_RS12055 (HC660_23030) spoIVB 2316159..2317436 (-) 1278 WP_168748211.1 SpoIVB peptidase -
  HC660_RS12060 (HC660_23040) recN 2317797..2319527 (-) 1731 WP_168748212.1 DNA repair protein RecN Machinery gene
  HC660_RS12065 (HC660_23050) argR 2319563..2320012 (-) 450 WP_168748213.1 arginine repressor ArgR -
  HC660_RS12070 (HC660_23060) - 2320109..2320954 (-) 846 WP_168748214.1 TlyA family RNA methyltransferase -
  HC660_RS12075 (HC660_23070) dxs 2320951..2322852 (-) 1902 WP_010334885.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HC660_RS12080 (HC660_23080) - 2323031..2323921 (-) 891 WP_010334886.1 polyprenyl synthetase family protein -
  HC660_RS12085 (HC660_23090) - 2323911..2324165 (-) 255 WP_010334887.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64638.35 Da        Isoelectric Point: 4.7094

>NTDB_id=438485 HC660_RS12060 WP_168748212.1 2317797..2319527(-) (recN) [Bacillus mojavensis strain UCMB5075]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFQLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDEKHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIEARLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQELDSVGKDVAVEAANVSRIRKTWAKNLAEEIHRELKSLYMEKSTFDTEFKV
RTATRGEEAPVVNGQPVQLTEHGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=438485 HC660_RS12060 WP_168748212.1 2317797..2319527(-) (recN) [Bacillus mojavensis strain UCMB5075]
TTGTTAGCTGAATTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTAGTCGGTGGCCGCGGCTCATCTGAAT
TTGTCAGGTATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCAGTTAGACAGCGGCCATCCCGTTTTTGACGTTTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCGTATGCCG
GGTAAATGGCAAACTTGTAACGATTGCGTCGCTAAGAGAAATCGGCAGGCTTTTATTGGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAAACATCTTCAGCTATTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCGTATCAGGAAGGCTATCAGCGCTACATGAAGCTGCTTAAAAAGTTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
GCATCGGCTTGATCTGATTCAATTTCAGCTGGAAGAAATTGAATCAGCAAAGCTCGAACTGAACGAAGATGAGCAGCTGC
AAGAAGAGCGTCAGCAAATTTCAAATTTTGAGAAAATATTTGAATCACTGCAAAATGCTTATAATGCGCTGCGCAGCGAG
CAGGGCGGTCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
GTCTGAGAGTGTTTCGAACTCCTACTATCTTTTGGAGGACGCTACATTTCAAATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAACGATTGAATTTTATTGAGGCGCGTCTTAATGAGATTAAGCAGCTAAAGCGGAAATACGGGGCAACCGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACAGAGACAGCCATCTTCAGAGCCT
GAAGCAGGAGCTGGATTCGGTTGGTAAAGATGTTGCAGTAGAAGCGGCAAACGTTTCCCGAATCCGAAAAACATGGGCGA
AAAACCTGGCTGAGGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAGTCGACTTTTGATACGGAGTTTAAGGTT
AGAACAGCAACCCGCGGTGAGGAAGCGCCGGTTGTAAACGGGCAGCCTGTTCAGCTCACTGAACACGGGATTGATCTGGT
GAAATTTTTGATTTCTACCAATACTGGGGAGCCGCTGAAATCCCTTTCTAAAGTTGCTTCCGGCGGAGAGCTGTCAAGGG
TCATGCTTGCCATTAAAAGCATTTTCTCCTCACAGCAGGACGTTACCTCGATTATATTTGACGAGGTAGATACAGGCGTA
AGCGGCAGGGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCGATGGGATCACAAGTGCTTTGCATTACGCACCT
GCCTCAGGTGGCAGCCATGGCCGATACCCATCTGTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGGCGGAAATCGGGCGCATGATAGCAGGAGTCGAAGTCACAGACTTAACAAAACGC
CATGCGAAAGAGCTGTTAAAACAAGCGGATCAAGTCAAAACAACTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.139

100

0.951