Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   HC660_RS12050 Genome accession   NZ_CP051464
Coordinates   2315080..2315883 (-) Length   267 a.a.
NCBI ID   WP_168748210.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2310080..2320883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS12020 (HC660_22980) - 2311078..2311821 (-) 744 WP_168748205.1 glycerophosphodiester phosphodiesterase -
  HC660_RS12025 (HC660_22990) - 2311911..2312531 (-) 621 WP_168748206.1 N-acetylmuramoyl-L-alanine amidase -
  HC660_RS12030 (HC660_23000) - 2312554..2312847 (-) 294 WP_032731307.1 hypothetical protein -
  HC660_RS12035 - 2313188..2313322 (+) 135 WP_168748207.1 hypothetical protein -
  HC660_RS12040 (HC660_23010) - 2313395..2314513 (+) 1119 WP_168748208.1 NADH-dependent flavin oxidoreductase -
  HC660_RS12045 - 2314752..2314931 (-) 180 WP_168748209.1 hypothetical protein -
  HC660_RS12050 (HC660_23020) spo0A 2315080..2315883 (-) 804 WP_168748210.1 sporulation transcription factor Spo0A Regulator
  HC660_RS12055 (HC660_23030) spoIVB 2316159..2317436 (-) 1278 WP_168748211.1 SpoIVB peptidase -
  HC660_RS12060 (HC660_23040) recN 2317797..2319527 (-) 1731 WP_168748212.1 DNA repair protein RecN Machinery gene
  HC660_RS12065 (HC660_23050) argR 2319563..2320012 (-) 450 WP_168748213.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29733.23 Da        Isoelectric Point: 6.3917

>NTDB_id=438484 HC660_RS12050 WP_168748210.1 2315080..2315883(-) (spo0A) [Bacillus mojavensis strain UCMB5075]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESELKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKRKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=438484 HC660_RS12050 WP_168748210.1 2315080..2315883(-) (spo0A) [Bacillus mojavensis strain UCMB5075]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTCATCGGAGTTGCTTATAACGGACAGGAATGTCTGTCGCTATTTAAAGAAAAAGATCCTGATGTGCTCG
TCTTGGACATTATTATGCCGCATTTGGACGGACTTGCTGTTTTAGAGCGACTGAGAGAATCAGAGCTGAAAAAACAGCCA
AACGTCATCATGCTGACAGCCTTCGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTGGGAGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGCGCGC
CGTCATCACAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAGGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCTGCACATATTAAAGGCTATCTCTATCTGCGTGAAGCGATCTCAATGGTGTATAACGACAT
CGAACTGCTCGGCAGTATTACAAAAGTCCTCTATCCTGACATCGCCAAAAAATTCAATACAACCGCTAGCCGTGTAGAGA
GAGCGATCCGCCACGCAATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCCATATCCTCATTGTTCGGTTATACAGTC
AGCATGACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCGATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.251

100

0.993