Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   IPV47_RS08490 Genome accession   NZ_CP063387
Coordinates   1820316..1820921 (+) Length   201 a.a.
NCBI ID   WP_003091706.1    Uniprot ID   A0A0H2ZDR8
Organism   Pseudomonas aeruginosa strain ST1076_d100blood2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1815316..1825921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV47_RS08490 (IPV47_08485) clpP 1820316..1820921 (+) 606 WP_003091706.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IPV47_RS08495 (IPV47_08490) - 1821266..1822153 (-) 888 WP_003091705.1 metal-dependent hydrolase -
  IPV47_RS08500 (IPV47_08495) - 1822163..1823941 (-) 1779 WP_003110958.1 SDR family oxidoreductase -
  IPV47_RS08505 (IPV47_08500) - 1823938..1824813 (-) 876 WP_003110956.1 M24 family metallopeptidase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22142.22 Da        Isoelectric Point: 5.3571

>NTDB_id=438398 IPV47_RS08490 WP_003091706.1 1820316..1820921(+) (clpP) [Pseudomonas aeruginosa strain ST1076_d100blood2]
MKTDDKDREGGDSHGAIGAKLMEYALKVRKVFVTGGVDEKMAKDVVQQLHILASISDDPIYMFVNSPGGHVESGDMIFDA
IRFITPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQGPASNIEIYRREIVRMKERLDRIFAEATGQ
TPEKISADTERDFWLNAEEAVQYGLVNKIIVSEREITLPGQ

Nucleotide


Download         Length: 606 bp        

>NTDB_id=438398 IPV47_RS08490 WP_003091706.1 1820316..1820921(+) (clpP) [Pseudomonas aeruginosa strain ST1076_d100blood2]
ATGAAAACCGATGACAAGGACCGCGAAGGCGGCGACTCCCACGGCGCTATCGGCGCCAAGCTGATGGAGTACGCGCTCAA
GGTCAGGAAGGTGTTCGTCACCGGCGGGGTCGACGAGAAGATGGCCAAGGACGTTGTCCAGCAGCTGCATATCCTCGCCT
CGATCAGCGACGATCCGATCTACATGTTCGTCAATTCCCCGGGTGGCCACGTCGAGTCCGGCGACATGATCTTCGACGCG
ATCCGCTTCATCACACCGAAGGTCATCATGATCGGTTCCGGCAGCGTAGCCAGCGCCGGCGCGCTGATCTACGCCGCGGC
GGACAAGGAAAACCGCTATTCGCTGCCCAATACCCGCTTCCTTCTGCACCAGCCGTCGGGCGGCATCCAGGGGCCGGCGA
GCAACATCGAGATCTACCGCCGCGAGATCGTGCGGATGAAGGAACGCCTCGACCGGATCTTCGCCGAAGCCACCGGGCAG
ACGCCGGAGAAGATCAGCGCCGACACCGAGCGCGACTTCTGGCTGAACGCGGAAGAAGCCGTGCAGTACGGCCTGGTCAA
CAAGATCATCGTTTCGGAACGGGAGATCACGCTGCCTGGCCAGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.195

84.08

0.363