Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   HC661_RS02155 Genome accession   NZ_CP051463
Coordinates   426125..426244 (+) Length   39 a.a.
NCBI ID   WP_031378677.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5140     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 421125..431244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC661_RS02140 (HC661_04200) - 422737..423420 (+) 684 WP_007410267.1 response regulator transcription factor -
  HC661_RS02145 (HC661_04210) - 423407..424840 (+) 1434 WP_015416810.1 HAMP domain-containing sensor histidine kinase -
  HC661_RS02150 (HC661_04220) rapC 424993..426141 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  HC661_RS02155 (HC661_04230) phrC 426125..426244 (+) 120 WP_031378677.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  HC661_RS02160 - 426393..426488 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  HC661_RS02165 (HC661_04240) - 426583..427947 (-) 1365 WP_015416811.1 aspartate kinase -
  HC661_RS02170 (HC661_04250) ceuB 428361..429314 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  HC661_RS02175 (HC661_04260) - 429304..430251 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  HC661_RS02180 (HC661_04270) - 430245..431003 (+) 759 WP_015416812.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4240.97 Da        Isoelectric Point: 8.0284

>NTDB_id=438383 HC661_RS02155 WP_031378677.1 426125..426244(+) (phrC) [Bacillus velezensis strain UCMB5140]
MKLKSKWFVICLAAAAIFTVTGAGQPDQADFHVTERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=438383 HC661_RS02155 WP_031378677.1 426125..426244(+) (phrC) [Bacillus velezensis strain UCMB5140]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGCCAGA
TCAGGCTGACTTCCATGTAACTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

75

100

0.769