Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HGK50_RS07145 | Genome accession | NZ_CP051435 |
| Coordinates | 1491911..1492486 (-) | Length | 191 a.a. |
| NCBI ID | WP_202132808.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ASHA-005 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1486911..1497486
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGK50_RS07135 (HGK50_07125) | - | 1488667..1489842 (-) | 1176 | WP_202148131.1 | restriction endonuclease subunit S | - |
| HGK50_RS07140 (HGK50_07130) | - | 1489839..1491878 (-) | 2040 | WP_202148132.1 | N-6 DNA methylase | - |
| HGK50_RS07145 (HGK50_07135) | comFC | 1491911..1492486 (-) | 576 | WP_202132808.1 | ComF family protein | Machinery gene |
| HGK50_RS07150 (HGK50_07140) | tmk | 1492474..1493049 (-) | 576 | WP_000289749.1 | dTMP kinase | - |
| HGK50_RS07155 (HGK50_07145) | coaD | 1493051..1493524 (-) | 474 | WP_202135527.1 | pantetheine-phosphate adenylyltransferase | - |
| HGK50_RS07160 (HGK50_07150) | - | 1493524..1494087 (-) | 564 | WP_202132810.1 | UbiX family flavin prenyltransferase | - |
| HGK50_RS07165 (HGK50_07155) | flgA | 1494097..1494753 (-) | 657 | WP_202148133.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HGK50_RS07170 (HGK50_07160) | uvrD | 1494750..1496795 (-) | 2046 | WP_202135529.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21282.84 Da Isoelectric Point: 9.0940
>NTDB_id=438296 HGK50_RS07145 WP_202132808.1 1491911..1492486(-) (comFC) [Helicobacter pylori strain ASHA-005]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=438296 HGK50_RS07145 WP_202132808.1 1491911..1492486(-) (comFC) [Helicobacter pylori strain ASHA-005]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |