Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HGK49_RS07145 Genome accession   NZ_CP051434
Coordinates   1474502..1475077 (-) Length   191 a.a.
NCBI ID   WP_202132808.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-004     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1469502..1480077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK49_RS07135 (HGK49_07130) - 1471225..1472433 (-) 1209 WP_202132806.1 restriction endonuclease subunit S -
  HGK49_RS07140 (HGK49_07135) - 1472430..1474469 (-) 2040 WP_202132807.1 N-6 DNA methylase -
  HGK49_RS07145 (HGK49_07140) comFC 1474502..1475077 (-) 576 WP_202132808.1 ComF family protein Machinery gene
  HGK49_RS07150 (HGK49_07145) tmk 1475065..1475640 (-) 576 WP_202132809.1 dTMP kinase -
  HGK49_RS07155 (HGK49_07150) coaD 1475642..1476115 (-) 474 WP_001169286.1 pantetheine-phosphate adenylyltransferase -
  HGK49_RS07160 (HGK49_07155) - 1476115..1476678 (-) 564 WP_202132810.1 UbiX family flavin prenyltransferase -
  HGK49_RS07165 (HGK49_07160) flgA 1476688..1477344 (-) 657 WP_202132811.1 flagellar basal body P-ring formation chaperone FlgA -
  HGK49_RS07170 (HGK49_07165) uvrD 1477341..1479386 (-) 2046 WP_202132812.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21282.84 Da        Isoelectric Point: 9.0940

>NTDB_id=438277 HGK49_RS07145 WP_202132808.1 1474502..1475077(-) (comFC) [Helicobacter pylori strain ASHA-004]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=438277 HGK49_RS07145 WP_202132808.1 1474502..1475077(-) (comFC) [Helicobacter pylori strain ASHA-004]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.335

100

0.963
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361