Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HGK49_RS01720 Genome accession   NZ_CP051434
Coordinates   349069..349473 (+) Length   134 a.a.
NCBI ID   WP_202133081.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344069..354473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK49_RS01685 (HGK49_01690) - 344249..345187 (-) 939 WP_202133076.1 tetraacyldisaccharide 4'-kinase -
  HGK49_RS01690 (HGK49_01695) - 345184..345966 (-) 783 WP_202133077.1 NAD+ synthase -
  HGK49_RS01700 (HGK49_01705) ilvC 346213..347205 (+) 993 WP_202133078.1 ketol-acid reductoisomerase -
  HGK49_RS01705 (HGK49_01710) minD 347224..348030 (+) 807 WP_202133079.1 septum site-determining protein MinD -
  HGK49_RS01710 (HGK49_01715) minE 348027..348260 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HGK49_RS01715 (HGK49_01720) dprA 348272..349072 (+) 801 WP_202133080.1 DNA-processing protein DprA Machinery gene
  HGK49_RS01720 (HGK49_01725) dprB 349069..349473 (+) 405 WP_202133081.1 Holliday junction resolvase RuvX Machinery gene
  HGK49_RS01725 (HGK49_01730) - 349641..349964 (+) 324 WP_202133082.1 tetratricopeptide repeat protein -
  HGK49_RS01730 (HGK49_01735) - 350154..350492 (+) 339 WP_202133083.1 hypothetical protein -
  HGK49_RS01735 (HGK49_01740) - 350476..351042 (+) 567 WP_202133084.1 hypothetical protein -
  HGK49_RS08115 (HGK49_01745) - 351054..351445 (+) 392 Protein_341 lysozyme -
  HGK49_RS01745 (HGK49_01750) - 351466..351684 (+) 219 WP_237388910.1 lysozyme -
  HGK49_RS01750 (HGK49_01755) - 352032..352418 (+) 387 WP_202133397.1 DUF1294 domain-containing protein -
  HGK49_RS01755 (HGK49_01760) - 352418..353203 (+) 786 WP_202133085.1 hypothetical protein -
  HGK49_RS01760 (HGK49_01765) - 353193..354287 (+) 1095 WP_202133086.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15094.55 Da        Isoelectric Point: 9.1727

>NTDB_id=438270 HGK49_RS01720 WP_202133081.1 349069..349473(+) (dprB) [Helicobacter pylori strain ASHA-004]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=438270 HGK49_RS01720 WP_202133081.1 349069..349473(+) (dprB) [Helicobacter pylori strain ASHA-004]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAGGACGGCCGGCTAGACTCTTTGAGCGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955