Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IN859_RS00040 Genome accession   NZ_CP063349
Coordinates   10098..10835 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain BS15R-A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5098..15835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IN859_RS00025 (IN859_00025) clpC 5552..8125 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  IN859_RS00030 (IN859_00030) yfiH 8255..8986 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  IN859_RS00035 (IN859_00035) rluD 8983..9963 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IN859_RS00040 (IN859_00040) comL 10098..10835 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IN859_RS00045 (IN859_00045) raiA 11106..11447 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IN859_RS00050 (IN859_00050) pheL 11551..11598 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  IN859_RS00055 (IN859_00055) pheA 11697..12857 (+) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  IN859_RS00060 (IN859_00060) tyrA 12900..14021 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IN859_RS00065 (IN859_00065) aroF 14032..15102 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IN859_RS00070 (IN859_00070) yfiL 15312..15677 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=437969 IN859_RS00040 WP_000197686.1 10098..10835(+) (comL) [Escherichia coli strain BS15R-A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=437969 IN859_RS00040 WP_000197686.1 10098..10835(+) (comL) [Escherichia coli strain BS15R-A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376