Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   B657_RS05750 Genome accession   NC_018520
Coordinates   1096605..1097183 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   P40396
Organism   Bacillus subtilis QB928     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1091605..1102183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B657_RS05730 (B657_10380) hemAT 1092116..1093414 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  B657_RS05735 (B657_10390) comW 1093553..1095082 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  B657_RS05740 (B657_10400) yhxC 1095194..1096051 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  B657_RS05745 (B657_10410) yhzC 1096079..1096312 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  B657_RS05750 (B657_10420) comK 1096605..1097183 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  B657_RS05755 (B657_10430) yhxD 1097230..1098129 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  B657_RS05760 (B657_10440) yhjA 1098346..1098615 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  B657_RS05765 (B657_10450) yhjB 1098658..1100127 (-) 1470 WP_003233134.1 sodium:solute symporter -
  B657_RS05770 (B657_10460) yhjC 1100124..1100324 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  B657_RS05775 (B657_10470) - 1100532..1100894 (-) 363 WP_003233132.1 hypothetical protein -
  B657_RS05780 (B657_10480) yhjE 1101046..1101669 (+) 624 WP_010886465.1 VTT domain-containing protein -
  B657_RS05785 (B657_10490) lepB 1101671..1102177 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=43773 B657_RS05750 WP_003245329.1 1096605..1097183(+) (comK) [Bacillus subtilis QB928]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=43773 B657_RS05750 WP_003245329.1 1096605..1097183(+) (comK) [Bacillus subtilis QB928]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P40396

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment