Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IM720_RS01640 Genome accession   NZ_CP063233
Coordinates   361208..362554 (-) Length   448 a.a.
NCBI ID   WP_024072637.1    Uniprot ID   A0ACA7NYE6
Organism   Pseudomonas fluorescens strain KF1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 356208..367554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM720_RS01625 (IM720_01625) - 356333..358438 (+) 2106 WP_102624632.1 GGDEF domain-containing protein -
  IM720_RS01630 (IM720_01630) - 358527..359303 (+) 777 WP_024072635.1 N-acetylmuramoyl-L-alanine amidase -
  IM720_RS01635 (IM720_01635) - 359410..361197 (-) 1788 WP_024072636.1 ATP-binding protein -
  IM720_RS01640 (IM720_01640) luxO 361208..362554 (-) 1347 WP_024072637.1 sigma-54-dependent response regulator transcription factor AlgB Regulator
  IM720_RS01645 (IM720_01645) - 362944..363228 (+) 285 WP_024072638.1 hypothetical protein -
  IM720_RS01650 (IM720_01650) - 363307..363471 (+) 165 WP_003170804.1 DUF1328 domain-containing protein -
  IM720_RS01655 (IM720_01655) - 363474..363941 (+) 468 WP_024072639.1 inhibitor of vertebrate lysozyme family protein -
  IM720_RS01660 (IM720_01660) gltP 364670..366001 (+) 1332 WP_024072640.1 glutamate/aspartate:proton symporter GltP -
  IM720_RS01665 (IM720_01665) - 366097..367326 (+) 1230 WP_024072641.1 nucleoside recognition domain-containing protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49601.50 Da        Isoelectric Point: 5.4019

>NTDB_id=437609 IM720_RS01640 WP_024072637.1 361208..362554(-) (luxO) [Pseudomonas fluorescens strain KF1]
MESAKELQGRILLVDDESAILRTFRYCLEDEGYTVATANSAAQADTLMQRQVFDLCFLDLRLGEDNGLDVLAQMRIQAPW
MRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGAVRQSKDGLDSHSPAMMVVLET
ARQVAGTDANILILGESGTGKGELARAIHGWSKRSKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADG
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYRLNVITLHLPPLRE
RSEDILTLADRFLARFVKEYARPARGFSDEAREALLNYRWPGNIRELRNVVERASIICPQEKVEISHLGMAEQPTNNAPR
IGAALSLDELEKAHIGAVLATSDTLDQAARTLGIDASTLYRKRKQYNL

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=437609 IM720_RS01640 WP_024072637.1 361208..362554(-) (luxO) [Pseudomonas fluorescens strain KF1]
ATGGAATCAGCCAAGGAACTTCAAGGCCGTATTCTTTTAGTGGATGACGAATCCGCGATCCTCCGCACCTTCCGTTATTG
CCTGGAAGATGAAGGCTACACCGTGGCCACCGCCAACAGCGCCGCCCAAGCCGATACCCTGATGCAGCGCCAGGTGTTCG
ACCTGTGCTTCCTGGACCTGCGCCTGGGCGAAGACAACGGCCTGGATGTATTGGCCCAAATGCGAATTCAAGCCCCCTGG
ATGCGCGTGGTGATTGTGACCGCGCATTCGGCGGTCGATACGGCCGTGGATGCCATCCAGGCCGGTGCTGCCGACTACCT
GGTCAAGCCCTGCAGCCCGGACCAGTTGCGCCTGGCCACCGCCAAGCAGTTGGAAGTGCGCCAGCTCTCCGCGCGCCTGG
AAGCCCTTGAGGGCGCAGTCCGCCAATCGAAGGACGGCCTCGACTCCCATAGCCCGGCGATGATGGTGGTGCTGGAAACC
GCACGCCAGGTGGCCGGGACTGATGCCAATATCCTGATCCTCGGCGAGTCCGGCACGGGTAAAGGCGAGCTCGCTCGTGC
TATTCACGGCTGGAGCAAACGTTCGAAGAAGTCCTGCGTCACCATCAACTGCCCCTCTCTGACGGCGGAACTGATGGAGA
GCGAATTGTTCGGACACAGCCGCGGAGCCTTCACCGGCGCCAGCGAGAGTACCCTGGGGCGTGTCAACCAGGCGGACGGC
GGCACGTTGTTTCTTGACGAAATCGGCGACTTTCCCCTCACTTTACAGCCCAAATTACTGCGATTCATCCAGGACAAGGA
ATACGAGCGCGTGGGTGACCCGGTGACCCGGCGCGCCGATGTGCGCATCCTCGCGGCTACCAACCTGAACCTGGAAGACA
TGGTGCGCGACGGTCGCTTCCGCGAAGACTTGCTGTACCGCCTCAATGTCATCACCCTGCACCTGCCGCCGTTGCGCGAA
CGCAGTGAAGACATCCTGACCCTGGCCGACCGCTTCCTGGCGCGCTTCGTCAAGGAGTATGCCCGTCCGGCACGCGGCTT
CAGCGACGAGGCCCGCGAGGCCCTGCTGAACTATCGCTGGCCGGGCAATATCCGCGAACTGCGCAACGTGGTGGAACGCG
CCAGCATTATTTGCCCTCAGGAAAAAGTCGAAATCAGCCATCTCGGCATGGCCGAGCAACCGACCAACAATGCGCCGCGG
ATTGGCGCGGCGTTGAGCTTGGATGAACTGGAAAAAGCTCACATCGGCGCGGTACTGGCCACCAGCGATACCCTGGACCA
GGCGGCCCGAACCCTAGGCATCGACGCATCGACCCTGTACCGCAAACGCAAACAGTACAACCTGTGA

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(149-313)

Bacterial regulatory protein, Fis family (HTH_8)

(406-446)

Response regulator receiver domain (Response_reg)

(11-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

38.053

100

0.384
  pilR Pseudomonas aeruginosa PAK

41.791

89.732

0.375