Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IL987_RS09295 Genome accession   NZ_CP063214
Coordinates   1890093..1890830 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ERP001     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1885093..1895830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL987_RS09280 clpC 1885547..1888120 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  IL987_RS09285 yfiH 1888250..1888981 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  IL987_RS09290 rluD 1888978..1889958 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IL987_RS09295 comL 1890093..1890830 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IL987_RS09300 raiA 1891100..1891441 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IL987_RS09305 pheL 1891545..1891592 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IL987_RS09310 pheA 1891691..1892851 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  IL987_RS09315 tyrA 1892894..1894015 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IL987_RS09320 aroF 1894026..1895096 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IL987_RS09325 yfiL 1895306..1895671 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=437534 IL987_RS09295 WP_000197686.1 1890093..1890830(+) (comL) [Escherichia coli strain ERP001]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=437534 IL987_RS09295 WP_000197686.1 1890093..1890830(+) (comL) [Escherichia coli strain ERP001]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376