Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HGI45_RS07255 | Genome accession | NZ_CP051292 |
| Coordinates | 1552971..1553546 (+) | Length | 191 a.a. |
| NCBI ID | WP_202137037.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ASHA-003 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1547971..1558546
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI45_RS07230 (HGI45_07235) | uvrD | 1548662..1550707 (+) | 2046 | WP_202137035.1 | DNA helicase UvrD | - |
| HGI45_RS07235 (HGI45_07240) | flgA | 1550704..1551360 (+) | 657 | WP_202135528.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HGI45_RS07240 (HGI45_07245) | - | 1551370..1551933 (+) | 564 | WP_180523615.1 | UbiX family flavin prenyltransferase | - |
| HGI45_RS07245 (HGI45_07250) | coaD | 1551933..1552406 (+) | 474 | WP_001169257.1 | pantetheine-phosphate adenylyltransferase | - |
| HGI45_RS07250 (HGI45_07255) | tmk | 1552408..1552983 (+) | 576 | WP_202137036.1 | dTMP kinase | - |
| HGI45_RS07255 (HGI45_07260) | comFC | 1552971..1553546 (+) | 576 | WP_202137037.1 | ComF family protein | Machinery gene |
| HGI45_RS07260 (HGI45_07265) | - | 1553579..1555618 (+) | 2040 | WP_202137038.1 | N-6 DNA methylase | - |
| HGI45_RS08075 (HGI45_07270) | - | 1555615..1556836 (+) | 1222 | Protein_1432 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21268.81 Da Isoelectric Point: 9.0940
>NTDB_id=437275 HGI45_RS07255 WP_202137037.1 1552971..1553546(+) (comFC) [Helicobacter pylori strain ASHA-003]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=437275 HGI45_RS07255 WP_202137037.1 1552971..1553546(+) (comFC) [Helicobacter pylori strain ASHA-003]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATTGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATTGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |