Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HGI45_RS04410 | Genome accession | NZ_CP051292 |
| Coordinates | 958663..958926 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177721.1 | Uniprot ID | B3VT61 |
| Organism | Helicobacter pylori strain ASHA-003 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 953663..963926
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI45_RS04385 (HGI45_04380) | - | 953809..954750 (-) | 942 | WP_202136620.1 | chemotaxis protein | - |
| HGI45_RS04390 (HGI45_04385) | ligA | 954823..956793 (+) | 1971 | WP_202136621.1 | NAD-dependent DNA ligase LigA | - |
| HGI45_RS04395 (HGI45_04390) | - | 956948..957736 (+) | 789 | WP_202136622.1 | integrase | - |
| HGI45_RS04400 (HGI45_04395) | - | 957887..958366 (+) | 480 | WP_202136624.1 | hypothetical protein | - |
| HGI45_RS04405 (HGI45_04400) | comB2 | 958363..958653 (+) | 291 | WP_000736104.1 | TrbC/VirB2 family protein | Machinery gene |
| HGI45_RS04410 (HGI45_04405) | comB3 | 958663..958926 (+) | 264 | WP_001177721.1 | hypothetical protein | Machinery gene |
| HGI45_RS04415 (HGI45_04410) | - | 958938..959174 (+) | 237 | WP_202136625.1 | hypothetical protein | - |
| HGI45_RS04420 (HGI45_04415) | - | 959174..960046 (+) | 873 | Protein_884 | transporter | - |
| HGI45_RS04425 (HGI45_04420) | - | 960075..961352 (-) | 1278 | WP_001274352.1 | RNA-guided endonuclease TnpB family protein | - |
| HGI45_RS04430 (HGI45_04425) | - | 961327..961980 (-) | 654 | WP_001042556.1 | IS607-like element IS607 family transposase | - |
| HGI45_RS04435 (HGI45_04430) | - | 962116..962367 (-) | 252 | WP_079354583.1 | hypothetical protein | - |
| HGI45_RS04440 (HGI45_04435) | - | 962415..962687 (-) | 273 | WP_001880357.1 | type II toxin-antitoxin system mRNA interferase toxin, HP0892 family | - |
| HGI45_RS04445 (HGI45_04440) | - | 962701..962988 (-) | 288 | WP_001134114.1 | type II toxin-antitoxin system antitoxin | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9946.74 Da Isoelectric Point: 5.7206
>NTDB_id=437271 HGI45_RS04410 WP_001177721.1 958663..958926(+) (comB3) [Helicobacter pylori strain ASHA-003]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=437271 HGI45_RS04410 WP_001177721.1 958663..958926(+) (comB3) [Helicobacter pylori strain ASHA-003]
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTAATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTAATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
58.621 |
100 |
0.586 |