Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   IMZ18_RS13260 Genome accession   NZ_CP063151
Coordinates   2459107..2459754 (-) Length   215 a.a.
NCBI ID   WP_014479290.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2454107..2464754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS13235 (IMZ18_13235) nsrR 2455709..2456149 (+) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  IMZ18_RS13240 (IMZ18_13240) lytF 2456303..2457763 (+) 1461 WP_014479292.1 peptidoglycan endopeptidase LytF -
  IMZ18_RS13245 (IMZ18_13245) yhdC 2457805..2458128 (-) 324 WP_014476269.1 YqzG/YhdC family protein -
  IMZ18_RS13250 (IMZ18_13250) yhdB 2458329..2458571 (+) 243 WP_003233373.1 YhdB family protein -
  IMZ18_RS13255 (IMZ18_13255) yhdA 2458586..2459110 (-) 525 WP_014479291.1 FMN-dependent NADPH-azoreductase -
  IMZ18_RS13260 (IMZ18_13260) vraR 2459107..2459754 (-) 648 WP_014479290.1 two-component system response regulator YhcZ Regulator
  IMZ18_RS13265 (IMZ18_13265) yhcY 2459751..2460890 (-) 1140 WP_014479289.1 two-component system sensor histidine kinase YhcY -
  IMZ18_RS13270 (IMZ18_13270) pgcA 2461039..2462784 (-) 1746 WP_014479288.1 phosphoglucomutase -
  IMZ18_RS13275 (IMZ18_13275) glpD 2462916..2464583 (-) 1668 WP_014479287.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24135.75 Da        Isoelectric Point: 6.3034

>NTDB_id=437271 IMZ18_RS13260 WP_014479290.1 2459107..2459754(-) (vraR) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=437271 IMZ18_RS13260 WP_014479290.1 2459107..2459754(-) (vraR) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409