Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HGI45_RS01660 Genome accession   NZ_CP051292
Coordinates   350975..351379 (+) Length   134 a.a.
NCBI ID   WP_001922949.1    Uniprot ID   M7S556
Organism   Helicobacter pylori strain ASHA-003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 345975..356379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI45_RS01625 (HGI45_01625) - 346153..347091 (-) 939 WP_202137289.1 tetraacyldisaccharide 4'-kinase -
  HGI45_RS01630 (HGI45_01630) - 347088..347870 (-) 783 WP_202137290.1 NAD+ synthase -
  HGI45_RS01640 (HGI45_01640) ilvC 348119..349111 (+) 993 WP_202137291.1 ketol-acid reductoisomerase -
  HGI45_RS01645 (HGI45_01645) minD 349135..349941 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  HGI45_RS01650 (HGI45_01650) minE 349938..350171 (+) 234 WP_077656567.1 cell division topological specificity factor MinE -
  HGI45_RS01655 (HGI45_01655) dprA 350178..350978 (+) 801 WP_202137292.1 DNA-processing protein DprA Machinery gene
  HGI45_RS01660 (HGI45_01660) dprB 350975..351379 (+) 405 WP_001922949.1 Holliday junction resolvase RuvX Machinery gene
  HGI45_RS01665 (HGI45_01665) - 351613..352080 (+) 468 WP_202137293.1 tetratricopeptide repeat protein -
  HGI45_RS01670 (HGI45_01670) - 352267..352605 (+) 339 WP_000699891.1 hypothetical protein -
  HGI45_RS01675 (HGI45_01675) - 352589..353149 (+) 561 WP_202137294.1 hypothetical protein -
  HGI45_RS01680 (HGI45_01680) - 353326..354207 (-) 882 WP_202137295.1 RluA family pseudouridine synthase -
  HGI45_RS01685 (HGI45_01685) recJ 354207..355757 (-) 1551 WP_202137296.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15094.50 Da        Isoelectric Point: 8.7185

>NTDB_id=437265 HGI45_RS01660 WP_001922949.1 350975..351379(+) (dprB) [Helicobacter pylori strain ASHA-003]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLEHLGKKSKRLATKDGRLDSLSACRILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=437265 HGI45_RS01660 WP_001922949.1 350975..351379(+) (dprB) [Helicobacter pylori strain ASHA-003]
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTGGAAGC
GATTTTACGCCACAACAGGAATCAGGCTTCTAGGGATTTGAGCGATTTATTGAGAGAAAAGAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAACGAAAGCTATGCAGACACTCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCCAGCGTAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAGCAAGCGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGTGCTTGTAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M7S556

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933