Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HGI45_RS00095 Genome accession   NZ_CP051292
Coordinates   14071..14334 (+) Length   87 a.a.
NCBI ID   WP_000584950.1    Uniprot ID   M7S5V4
Organism   Helicobacter pylori strain ASHA-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9071..19334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI45_RS00070 (HGI45_00070) groES 9356..9712 (-) 357 WP_000671949.1 co-chaperone GroES -
  HGI45_RS00075 (HGI45_00075) dnaG 9998..11677 (+) 1680 WP_202137116.1 DNA primase -
  HGI45_RS00080 (HGI45_00080) - 11674..12726 (+) 1053 WP_202137117.1 MnmA/TRMU family protein -
  HGI45_RS00085 (HGI45_00085) - 12817..13644 (+) 828 WP_001154940.1 DUF5718 family protein -
  HGI45_RS00090 (HGI45_00090) comB2 13790..14071 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HGI45_RS00095 (HGI45_00095) comB3 14071..14334 (+) 264 WP_000584950.1 hypothetical protein Machinery gene
  HGI45_RS00100 (HGI45_00100) comB4 14336..16699 (+) 2364 WP_202137118.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HGI45_RS00110 (HGI45_00110) - 17004..18344 (+) 1341 WP_202137119.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.07 Da        Isoelectric Point: 9.5507

>NTDB_id=437255 HGI45_RS00095 WP_000584950.1 14071..14334(+) (comB3) [Helicobacter pylori strain ASHA-003]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSALEFFDEDIADIIIAKSKIKT
KTRCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=437255 HGI45_RS00095 WP_000584950.1 14071..14334(+) (comB3) [Helicobacter pylori strain ASHA-003]
ATGATTATCCTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGCGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTATCGCTAAAAGCAAAATAAAGACC
AAAACCAGATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M7S5V4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966