Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HGI45_RS00090 Genome accession   NZ_CP051292
Coordinates   13790..14071 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain ASHA-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8790..19071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI45_RS00070 (HGI45_00070) groES 9356..9712 (-) 357 WP_000671949.1 co-chaperone GroES -
  HGI45_RS00075 (HGI45_00075) dnaG 9998..11677 (+) 1680 WP_202137116.1 DNA primase -
  HGI45_RS00080 (HGI45_00080) - 11674..12726 (+) 1053 WP_202137117.1 MnmA/TRMU family protein -
  HGI45_RS00085 (HGI45_00085) - 12817..13644 (+) 828 WP_001154940.1 DUF5718 family protein -
  HGI45_RS00090 (HGI45_00090) comB2 13790..14071 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HGI45_RS00095 (HGI45_00095) comB3 14071..14334 (+) 264 WP_000584950.1 hypothetical protein Machinery gene
  HGI45_RS00100 (HGI45_00100) comB4 14336..16699 (+) 2364 WP_202137118.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HGI45_RS00110 (HGI45_00110) - 17004..18344 (+) 1341 WP_202137119.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=437254 HGI45_RS00090 WP_001272686.1 13790..14071(+) (comB2) [Helicobacter pylori strain ASHA-003]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=437254 HGI45_RS00090 WP_001272686.1 13790..14071(+) (comB2) [Helicobacter pylori strain ASHA-003]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATCTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989