Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HGI44_RS07275 | Genome accession | NZ_CP051291 |
| Coordinates | 1501415..1501990 (-) | Length | 191 a.a. |
| NCBI ID | WP_202136235.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ASHA-002 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1496415..1506990
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI44_RS07265 (HGI44_07255) | - | 1498156..1499346 (-) | 1191 | WP_202136233.1 | restriction endonuclease subunit S | - |
| HGI44_RS07270 (HGI44_07260) | - | 1499343..1501382 (-) | 2040 | WP_202136234.1 | N-6 DNA methylase | - |
| HGI44_RS07275 (HGI44_07265) | comFC | 1501415..1501990 (-) | 576 | WP_202136235.1 | ComF family protein | Machinery gene |
| HGI44_RS07280 (HGI44_07270) | tmk | 1501978..1502553 (-) | 576 | WP_202136236.1 | dTMP kinase | - |
| HGI44_RS07285 (HGI44_07275) | coaD | 1502555..1503028 (-) | 474 | WP_014662293.1 | pantetheine-phosphate adenylyltransferase | - |
| HGI44_RS07290 (HGI44_07280) | - | 1503028..1503591 (-) | 564 | WP_202132810.1 | UbiX family flavin prenyltransferase | - |
| HGI44_RS07295 (HGI44_07285) | flgA | 1503601..1504257 (-) | 657 | WP_202135528.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HGI44_RS07300 (HGI44_07290) | uvrD | 1504254..1506299 (-) | 2046 | WP_202135529.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21280.97 Da Isoelectric Point: 9.4455
>NTDB_id=437253 HGI44_RS07275 WP_202136235.1 1501415..1501990(-) (comFC) [Helicobacter pylori strain ASHA-002]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKIMQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKIMQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=437253 HGI44_RS07275 WP_202136235.1 1501415..1501990(-) (comFC) [Helicobacter pylori strain ASHA-002]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCATGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGTAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCATGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGTAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |