Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HGI43_RS07115 | Genome accession | NZ_CP051290 |
| Coordinates | 1477879..1478454 (-) | Length | 191 a.a. |
| NCBI ID | WP_202135526.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ASHA-001 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1472879..1483454
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI43_RS07100 | - | 1474600..1475142 (-) | 543 | WP_237389471.1 | restriction endonuclease subunit S | - |
| HGI43_RS07105 | - | 1475169..1475810 (-) | 642 | WP_202135524.1 | restriction endonuclease subunit S | - |
| HGI43_RS07110 (HGI43_07095) | - | 1475807..1477846 (-) | 2040 | WP_202135525.1 | N-6 DNA methylase | - |
| HGI43_RS07115 (HGI43_07100) | comFC | 1477879..1478454 (-) | 576 | WP_202135526.1 | ComF family protein | Machinery gene |
| HGI43_RS07120 (HGI43_07105) | tmk | 1478442..1479017 (-) | 576 | WP_000289769.1 | dTMP kinase | - |
| HGI43_RS07125 (HGI43_07110) | coaD | 1479019..1479492 (-) | 474 | WP_202135527.1 | pantetheine-phosphate adenylyltransferase | - |
| HGI43_RS07130 (HGI43_07115) | - | 1479492..1480055 (-) | 564 | WP_202132810.1 | UbiX family flavin prenyltransferase | - |
| HGI43_RS07135 (HGI43_07120) | flgA | 1480065..1480721 (-) | 657 | WP_202135528.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HGI43_RS07140 (HGI43_07125) | uvrD | 1480718..1482763 (-) | 2046 | WP_202135529.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21250.88 Da Isoelectric Point: 9.0940
>NTDB_id=437233 HGI43_RS07115 WP_202135526.1 1477879..1478454(-) (comFC) [Helicobacter pylori strain ASHA-001]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=437233 HGI43_RS07115 WP_202135526.1 1477879..1478454(-) (comFC) [Helicobacter pylori strain ASHA-001]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACTCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCACTTTG
CAGTGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACTCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCACTTTG
CAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |