Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   IMZ18_RS09195 Genome accession   NZ_CP063151
Coordinates   1681628..1682059 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676628..1687059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS09185 (IMZ18_09185) hexA 1678112..1680688 (-) 2577 WP_014479821.1 DNA mismatch repair protein MutS Machinery gene
  IMZ18_RS09190 (IMZ18_09190) cotE 1680821..1681366 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  IMZ18_RS09195 (IMZ18_09195) ymcA 1681628..1682059 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  IMZ18_RS09200 (IMZ18_09200) miaB 1682061..1683590 (-) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IMZ18_RS09205 (IMZ18_09205) kbl 1683738..1684916 (-) 1179 WP_014479819.1 glycine C-acetyltransferase -
  IMZ18_RS09210 (IMZ18_09210) tdh 1684929..1685972 (-) 1044 WP_014479818.1 L-threonine 3-dehydrogenase -
  IMZ18_RS09215 (IMZ18_09215) spoVS 1686237..1686497 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=437232 IMZ18_RS09195 WP_003231834.1 1681628..1682059(-) (ymcA) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=437232 IMZ18_RS09195 WP_003231834.1 1681628..1682059(-) (ymcA) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1