Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HGI43_RS06645 Genome accession   NZ_CP051290
Coordinates   1379213..1380526 (-) Length   437 a.a.
NCBI ID   WP_202135476.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-001     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1374213..1385526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI43_RS06615 (HGI43_06605) nadC 1374676..1375497 (-) 822 WP_202135473.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HGI43_RS06620 (HGI43_06610) nadA 1375497..1376507 (-) 1011 WP_202135474.1 quinolinate synthase NadA -
  HGI43_RS06625 (HGI43_06615) - 1376497..1377300 (-) 804 WP_202132753.1 phosphatidylserine decarboxylase -
  HGI43_RS06630 (HGI43_06620) - 1377297..1377800 (-) 504 WP_000953078.1 hypothetical protein -
  HGI43_RS06635 (HGI43_06625) - 1377813..1378307 (-) 495 WP_202135475.1 hypothetical protein -
  HGI43_RS06640 (HGI43_06630) mqnP 1378300..1379184 (-) 885 WP_000913954.1 menaquinone biosynthesis prenyltransferase MqnP -
  HGI43_RS06645 (HGI43_06635) comEC/comE3 1379213..1380526 (-) 1314 WP_202135476.1 ComEC/Rec2 family competence protein Machinery gene
  HGI43_RS06650 (HGI43_06640) - 1380523..1381989 (-) 1467 WP_202135477.1 replicative DNA helicase -
  HGI43_RS06655 (HGI43_06645) - 1382000..1383394 (-) 1395 WP_202135478.1 NAD(P)H-hydrate dehydratase -
  HGI43_RS06660 (HGI43_06650) crdS 1383397..1384599 (-) 1203 WP_202136020.1 copper-sensing histidine kinase CrdS -
  HGI43_RS06665 (HGI43_06655) crdR 1384565..1385206 (-) 642 WP_001169813.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50326.35 Da        Isoelectric Point: 9.8860

>NTDB_id=437231 HGI43_RS06645 WP_202135476.1 1379213..1380526(-) (comEC/comE3) [Helicobacter pylori strain ASHA-001]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTISVFSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=437231 HGI43_RS06645 WP_202135476.1 1379213..1380526(-) (comEC/comE3) [Helicobacter pylori strain ASHA-001]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGTTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCACTCATTCAAACGCTTTAGTGGGTAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGATTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTCTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959