Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HGI43_RS01600 Genome accession   NZ_CP051290
Coordinates   327511..327915 (+) Length   134 a.a.
NCBI ID   WP_202133081.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 322511..332915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI43_RS01565 (HGI43_01565) - 322691..323629 (-) 939 WP_202135743.1 tetraacyldisaccharide 4'-kinase -
  HGI43_RS01570 (HGI43_01570) - 323626..324408 (-) 783 WP_202133077.1 NAD+ synthase -
  HGI43_RS01580 (HGI43_01580) ilvC 324655..325647 (+) 993 WP_202133078.1 ketol-acid reductoisomerase -
  HGI43_RS01585 (HGI43_01585) minD 325666..326472 (+) 807 WP_202133079.1 septum site-determining protein MinD -
  HGI43_RS01590 (HGI43_01590) minE 326469..326702 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HGI43_RS01595 (HGI43_01595) dprA 326714..327514 (+) 801 WP_202133080.1 DNA-processing protein DprA Machinery gene
  HGI43_RS01600 (HGI43_01600) dprB 327511..327915 (+) 405 WP_202133081.1 Holliday junction resolvase RuvX Machinery gene
  HGI43_RS01605 (HGI43_01605) - 328043..328831 (+) 789 WP_202135744.1 tetratricopeptide repeat protein -
  HGI43_RS01610 (HGI43_01610) - 329027..329365 (+) 339 WP_202135745.1 hypothetical protein -
  HGI43_RS01615 (HGI43_01615) - 329349..329915 (+) 567 WP_202133084.1 hypothetical protein -
  HGI43_RS07910 (HGI43_01620) - 329927..330318 (+) 392 Protein_312 lysozyme -
  HGI43_RS07790 - 330339..330515 (+) 177 WP_014534379.1 hypothetical protein -
  HGI43_RS07795 (HGI43_01630) - 330608..330793 (+) 186 WP_014534380.1 hypothetical protein -
  HGI43_RS01635 (HGI43_01635) - 330947..331333 (+) 387 WP_202133397.1 DUF1294 domain-containing protein -
  HGI43_RS01640 (HGI43_01640) - 331333..332118 (+) 786 WP_202135746.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15094.55 Da        Isoelectric Point: 9.1727

>NTDB_id=437226 HGI43_RS01600 WP_202133081.1 327511..327915(+) (dprB) [Helicobacter pylori strain ASHA-001]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=437226 HGI43_RS01600 WP_202133081.1 327511..327915(+) (dprB) [Helicobacter pylori strain ASHA-001]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAGGACGGCCGGCTAGACTCTTTGAGCGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955