Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HGG68_RS05030 Genome accession   NZ_CP051263
Coordinates   1073185..1073814 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli CFT073     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068185..1078814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGG68_RS05010 ycbZ 1068572..1070332 (-) 1761 WP_000156504.1 Lon protease family protein -
  HGG68_RS05015 matP 1070518..1070970 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  HGG68_RS05020 ompA 1071049..1072101 (-) 1053 WP_001528868.1 porin OmpA -
  HGG68_RS05025 sulA 1072457..1072966 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  HGG68_RS05030 sxy/tfoX 1073185..1073814 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HGG68_RS05035 yccS 1073777..1075939 (-) 2163 WP_000875041.1 YccS family putative transporter -
  HGG68_RS05040 yccF 1075949..1076395 (-) 447 WP_001261236.1 YccF domain-containing protein -
  HGG68_RS05045 helD 1076518..1078572 (+) 2055 WP_001443200.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=437149 HGG68_RS05030 WP_000839136.1 1073185..1073814(+) (sxy/tfoX) [Escherichia coli CFT073]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=437149 HGG68_RS05030 WP_000839136.1 1073185..1073814(+) (sxy/tfoX) [Escherichia coli CFT073]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99