Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   IMY14_RS16965 Genome accession   NZ_CP063150
Coordinates   3236163..3237023 (-) Length   286 a.a.
NCBI ID   WP_015483633.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3231163..3242023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS16930 mrpE 3231394..3231870 (+) 477 WP_174616587.1 Na+/H+ antiporter subunit E -
  IMY14_RS16935 mrpF 3231870..3232154 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  IMY14_RS16940 mnhG 3232138..3232512 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  IMY14_RS16945 yuxO 3232551..3232931 (-) 381 WP_174616601.1 hotdog fold thioesterase -
  IMY14_RS16950 comA 3232949..3233593 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  IMY14_RS16955 - 3233674..3235974 (-) 2301 Protein_3312 histidine kinase -
  IMY14_RS16960 comX 3235986..3236150 (-) 165 WP_015384519.1 competence pheromone ComX -
  IMY14_RS16965 comQ 3236163..3237023 (-) 861 WP_015483633.1 polyprenyl synthetase family protein Regulator
  IMY14_RS16970 degQ 3237208..3237348 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  IMY14_RS16975 - 3237570..3237695 (+) 126 WP_154796978.1 hypothetical protein -
  IMY14_RS16980 - 3237809..3238177 (+) 369 WP_015483634.1 hypothetical protein -
  IMY14_RS16985 pdeH 3238153..3239382 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  IMY14_RS16990 pncB 3239519..3240991 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  IMY14_RS16995 pncA 3241007..3241558 (-) 552 WP_014477836.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32511.47 Da        Isoelectric Point: 4.7414

>NTDB_id=437148 IMY14_RS16965 WP_015483633.1 3236163..3237023(-) (comQ) [Bacillus subtilis strain s-16]
MKEIVSQKIMNQDLERYLQNFIESKDTFEFADLALHHYLAFNGQDQKAIELLAAGIELLILSFDIYDDLEDQDNGSAVWM
KIDSSIALNAVTALYTLSIQVMCQASHEPEFTQEILNFALQSIQGQHDDIVNAPQTEEACLEMIKNKSGALTALPCVMGV
MLATGKYHPIVASYSYELGIIAQIENDYQGLYYLNNDFIQKKNTLAYLYLNKRFNAASAEILSWYENAELFLSLNPKQIK
EKLTEAGVVQYLLVMKHLSLQKLKKEIARLELQENKIKKLITGIIK

Nucleotide


Download         Length: 861 bp        

>NTDB_id=437148 IMY14_RS16965 WP_015483633.1 3236163..3237023(-) (comQ) [Bacillus subtilis strain s-16]
ATGAAGGAGATTGTAAGCCAAAAAATAATGAATCAGGACTTGGAACGATATCTTCAGAATTTTATTGAGTCTAAGGATAC
GTTTGAGTTTGCCGATTTGGCTCTTCATCATTATTTAGCTTTTAACGGTCAGGACCAAAAAGCAATCGAATTGCTAGCTG
CCGGAATTGAATTGCTTATACTCTCATTCGATATTTATGATGACTTAGAGGATCAAGATAATGGAAGTGCTGTCTGGATG
AAGATTGACTCGTCAATCGCTTTAAATGCAGTTACAGCTCTTTACACCCTAAGTATACAAGTGATGTGTCAAGCTAGTCA
TGAACCAGAATTTACACAAGAGATATTGAATTTTGCGTTACAATCAATTCAAGGCCAGCATGATGATATTGTGAATGCGC
CGCAAACTGAAGAAGCCTGTCTTGAAATGATCAAAAATAAATCAGGAGCGCTAACGGCATTGCCCTGTGTAATGGGAGTA
ATGTTGGCAACAGGCAAATACCATCCCATTGTAGCTTCTTATTCTTATGAACTTGGGATTATTGCACAAATCGAAAATGA
TTACCAAGGTTTATATTATTTAAATAACGATTTTATTCAGAAGAAAAACACATTGGCATACTTATACTTAAATAAACGTT
TTAATGCAGCTTCTGCAGAAATCTTGAGTTGGTATGAAAATGCTGAGTTGTTCTTATCATTGAATCCCAAACAAATAAAA
GAAAAATTAACTGAGGCAGGCGTAGTGCAATATTTACTTGTAATGAAACACTTGTCATTACAAAAACTAAAGAAAGAAAT
TGCTAGATTAGAATTGCAAGAGAATAAAATAAAAAAATTAATAACAGGAATCATAAAATAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(39-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45.423

99.301

0.451