Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HF522_RS02610 Genome accession   NZ_CP051227
Coordinates   557771..558361 (-) Length   196 a.a.
NCBI ID   WP_005709832.1    Uniprot ID   A0A0J6XXP0
Organism   Lacticaseibacillus rhamnosus strain LDTM7511     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 552771..563361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF522_RS02585 (HF522_02730) - 553508..553702 (-) 195 WP_005707490.1 hypothetical protein -
  HF522_RS02590 (HF522_02735) cydB 553742..554761 (-) 1020 WP_014568875.1 cytochrome d ubiquinol oxidase subunit II -
  HF522_RS02595 (HF522_02740) - 554754..556232 (-) 1479 WP_014568874.1 cytochrome ubiquinol oxidase subunit I -
  HF522_RS02600 (HF522_02745) - 556543..557049 (+) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  HF522_RS02605 (HF522_02755) rpsR 557443..557679 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  HF522_RS02610 (HF522_02760) ssb 557771..558361 (-) 591 WP_005709832.1 single-stranded DNA-binding protein Machinery gene
  HF522_RS02615 (HF522_02765) rpsF 558391..558687 (-) 297 WP_005685677.1 30S ribosomal protein S6 -
  HF522_RS02620 (HF522_02770) ssb 558814..559245 (-) 432 WP_005690380.1 single-stranded DNA-binding protein -
  HF522_RS02625 (HF522_02775) - 559355..559441 (+) 87 Protein_524 deoxyribose-phosphate aldolase -
  HF522_RS02630 - 559569..560081 (-) 513 WP_223804855.1 PedC/BrcD family bacteriocin maturation disulfide isomerase -
  HF522_RS02635 (HF522_02785) - 560176..560403 (-) 228 WP_012807316.1 hypothetical protein -
  HF522_RS02640 (HF522_02790) - 560783..560881 (-) 99 Protein_527 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20932.66 Da        Isoelectric Point: 4.9056

>NTDB_id=437076 HF522_RS02610 WP_005709832.1 557771..558361(-) (ssb) [Lacticaseibacillus rhamnosus strain LDTM7511]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=437076 HF522_RS02610 WP_005709832.1 557771..558361(-) (ssb) [Lacticaseibacillus rhamnosus strain LDTM7511]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6XXP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.749

100

0.505