Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   HGD77_RS17005 Genome accession   NZ_CP051208
Coordinates   1958414..1958839 (-) Length   141 a.a.
NCBI ID   WP_392389738.1    Uniprot ID   -
Organism   Acinetobacter sp. NEB149     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1953414..1963839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGD77_RS09300 (HGD77_09305) tadA 1953650..1954165 (-) 516 WP_004278860.1 tRNA adenosine(34) deaminase TadA -
  HGD77_RS09305 (HGD77_09310) - 1954172..1955293 (-) 1122 WP_004278862.1 enoyl-CoA hydratase/isomerase family protein -
  HGD77_RS09310 (HGD77_09315) ung 1955290..1956002 (-) 713 Protein_1803 uracil-DNA glycosylase -
  HGD77_RS09315 (HGD77_09320) - 1956049..1956645 (-) 597 WP_004278864.1 6-pyruvoyl trahydropterin synthase family protein -
  HGD77_RS09320 (HGD77_09325) gspK 1956798..1957769 (-) 972 WP_138742529.1 type II secretion system minor pseudopilin GspK -
  HGD77_RS09325 (HGD77_09330) xcpW 1957776..1958417 (-) 642 WP_004278869.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HGD77_RS17005 (HGD77_09335) xcpV 1958414..1958839 (-) 426 WP_392389738.1 type II secretion system minor pseudopilin GspI Machinery gene
  HGD77_RS09335 (HGD77_09340) - 1958973..1959524 (-) 552 WP_004278872.1 type II secretion system protein -
  HGD77_RS09340 (HGD77_09345) - 1959534..1960148 (-) 615 WP_004278873.1 TetR/AcrR family transcriptional regulator -
  HGD77_RS09345 (HGD77_09350) - 1960190..1960963 (-) 774 WP_004278875.1 TatD family hydrolase -
  HGD77_RS09350 (HGD77_09355) - 1960991..1961332 (-) 342 WP_004278877.1 PilZ domain-containing protein -
  HGD77_RS09355 (HGD77_09360) - 1961348..1962328 (-) 981 WP_138742528.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  HGD77_RS09360 (HGD77_09365) kdsB 1962343..1963104 (-) 762 WP_138742527.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15583.77 Da        Isoelectric Point: 7.0135

>NTDB_id=436961 HGD77_RS17005 WP_392389738.1 1958414..1958839(-) (xcpV) [Acinetobacter sp. NEB149]
MAFGLAARSSVTRLNRASGFTLLEVMVALAIFATAAMTLTKVAIQYTQSTSNAILRTKAQFVALNEVAQMEINQEWMEGT
ASKQLTQQGETWQIDKRSEPTVSPNVQRIELQVSLVNQDSGQVESGITSLMFFNHRMNNTP

Nucleotide


Download         Length: 426 bp        

>NTDB_id=436961 HGD77_RS17005 WP_392389738.1 1958414..1958839(-) (xcpV) [Acinetobacter sp. NEB149]
ATAGCTTTCGGACTTGCGGCACGGTCGAGTGTTACTCGACTTAATCGTGCCTCAGGTTTTACCTTATTGGAAGTCATGGT
GGCCTTGGCAATTTTTGCGACCGCAGCCATGACCCTGACCAAAGTCGCGATTCAATATACCCAGTCGACCTCGAATGCCA
TTCTACGTACCAAAGCACAGTTTGTTGCCTTAAATGAAGTGGCACAAATGGAAATTAATCAGGAATGGATGGAAGGGACG
GCTTCCAAACAGCTGACCCAGCAAGGTGAAACCTGGCAGATTGACAAGCGCAGCGAACCGACGGTCAGTCCGAATGTACA
ACGGATCGAGCTGCAGGTGAGTCTGGTTAATCAGGACAGTGGTCAGGTGGAATCTGGTATCACCAGCCTGATGTTCTTTA
ATCATCGTATGAACAATACTCCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(56-118)

Prokaryotic N-terminal methylation motif (N_methyl)

(15-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.333

85.106

0.624