NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	HGD77_RS09325	Genome accession	NZ_CP051208
Coordinates	1957776..1958417 (-)	Length	213 a.a.
NCBI ID	WP_004278869.1	Uniprot ID	A0A6N1KTR0
Organism	Acinetobacter sp. NEB149
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1952776..1963417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGD77_RS09295 (HGD77_09300)	-	1953158..1953589 (-)	432	WP_004278856.1	SRPBCC family protein	-
HGD77_RS09300 (HGD77_09305)	tadA	1953650..1954165 (-)	516	WP_004278860.1	tRNA adenosine(34) deaminase TadA	-
HGD77_RS09305 (HGD77_09310)	-	1954172..1955293 (-)	1122	WP_004278862.1	enoyl-CoA hydratase/isomerase family protein	-
HGD77_RS09310 (HGD77_09315)	ung	1955290..1956002 (-)	713	Protein_1803	uracil-DNA glycosylase	-
HGD77_RS09315 (HGD77_09320)	-	1956049..1956645 (-)	597	WP_004278864.1	6-pyruvoyl trahydropterin synthase family protein	-
HGD77_RS09320 (HGD77_09325)	gspK	1956798..1957769 (-)	972	WP_138742529.1	type II secretion system minor pseudopilin GspK	-
HGD77_RS09325 (HGD77_09330)	xcpW	1957776..1958417 (-)	642	WP_004278869.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HGD77_RS17005 (HGD77_09335)	xcpV	1958414..1958839 (-)	426	WP_392389738.1	type II secretion system minor pseudopilin GspI	Machinery gene
HGD77_RS09335 (HGD77_09340)	-	1958973..1959524 (-)	552	WP_004278872.1	type II secretion system protein	-
HGD77_RS09340 (HGD77_09345)	-	1959534..1960148 (-)	615	WP_004278873.1	TetR/AcrR family transcriptional regulator	-
HGD77_RS09345 (HGD77_09350)	-	1960190..1960963 (-)	774	WP_004278875.1	TatD family hydrolase	-
HGD77_RS09350 (HGD77_09355)	-	1960991..1961332 (-)	342	WP_004278877.1	PilZ domain-containing protein	-
HGD77_RS09355 (HGD77_09360)	-	1961348..1962328 (-)	981	WP_138742528.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
HGD77_RS09360 (HGD77_09365)	kdsB	1962343..1963104 (-)	762	WP_138742527.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 213 a.a. Molecular weight: 24303.50 Da Isoelectric Point: 4.5453

                                >NTDB_id=436947 HGD77_RS09325 WP_004278869.1 1957776..1958417(-) (xcpW) [Acinetobacter sp. NEB149]

MKPKGFTLVELMVAIAIFAVLSALGWKVFDYIVKTKDQNVIHEQRLGQLQQTYQQILRDTVQAVPLTANINGDIQPALVL

QNGRFNFSKTGVTDPLEEGISPDERIEYQYRADEQKLYRLKYRNLNQTGQDQPESSVLLSEVEQFQIVVLNPNELTQWPD

ASTDLNQLEQKQRLPKGVKINLTVNGVSYEWMFSLLNTDFLLDTQNTGQPSSE

Nucleotide

Download Length: 642 bp

                                >NTDB_id=436947 HGD77_RS09325 WP_004278869.1 1957776..1958417(-) (xcpW) [Acinetobacter sp. NEB149]

ATGAAGCCTAAAGGATTTACCCTGGTTGAATTAATGGTCGCAATTGCGATCTTTGCGGTGCTGTCTGCTTTGGGCTGGAA

AGTTTTTGATTATATTGTCAAAACCAAAGATCAGAATGTGATTCATGAACAGCGTTTAGGTCAGTTACAGCAAACCTATC

AGCAGATTCTGCGAGATACCGTACAGGCAGTACCCTTAACGGCCAATATCAATGGCGATATTCAGCCGGCTCTAGTGCTA

CAGAACGGACGCTTTAATTTCAGTAAAACTGGAGTGACTGACCCTTTGGAAGAGGGGATTTCCCCAGATGAGCGCATTGA

ATATCAGTATCGAGCTGATGAGCAGAAACTTTATCGCTTGAAATACCGGAACCTGAATCAGACAGGTCAAGATCAGCCCG

AATCCAGTGTTTTATTGTCGGAAGTGGAACAATTCCAGATCGTCGTACTCAATCCGAATGAGCTCACGCAATGGCCAGAT

GCTTCTACTGATCTGAATCAGTTAGAGCAGAAGCAAAGGTTGCCTAAAGGGGTTAAAATCAATTTAACCGTGAATGGCGT

CAGTTATGAATGGATGTTTAGTTTATTAAATACGGACTTTTTGCTTGATACTCAGAACACCGGTCAACCCAGCTCAGAAT

AA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-187)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6N1KTR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	58.209	94.366	0.549

Detailed information NTG0436947