Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   HGD77_RS14545 Genome accession   NZ_CP051208
Coordinates   3010640..3011794 (+) Length   384 a.a.
NCBI ID   WP_005105146.1    Uniprot ID   -
Organism   Acinetobacter sp. NEB149     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3005640..3016794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGD77_RS14530 (HGD77_14535) - 3007326..3009413 (-) 2088 WP_005105149.1 TonB-dependent copper receptor -
  HGD77_RS14535 (HGD77_14540) - 3009486..3009896 (-) 411 WP_004644876.1 DUF2946 family protein -
  HGD77_RS14540 (HGD77_14545) def 3009989..3010519 (-) 531 WP_004644875.1 peptide deformylase -
  HGD77_RS14545 (HGD77_14550) tsaP 3010640..3011794 (+) 1155 WP_005105146.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  HGD77_RS14550 (HGD77_14555) dprA 3011851..3012990 (+) 1140 WP_005105145.1 DNA-processing protein DprA Machinery gene
  HGD77_RS14555 (HGD77_14560) - 3013032..3013601 (+) 570 WP_005105144.1 L-threonylcarbamoyladenylate synthase -
  HGD77_RS14560 (HGD77_14565) - 3014046..3014942 (-) 897 WP_168730920.1 DMT family transporter -
  HGD77_RS14565 (HGD77_14570) - 3015133..3015678 (+) 546 WP_005105142.1 glutathione peroxidase -
  HGD77_RS14570 (HGD77_14575) - 3016004..3016603 (+) 600 WP_004644869.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42163.37 Da        Isoelectric Point: 8.8393

>NTDB_id=436958 HGD77_RS14545 WP_005105146.1 3010640..3011794(+) (tsaP) [Acinetobacter sp. NEB149]
MKKVLKGMPFFSALGFKNQMLALAVCVGVSMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLLAPDSVQGTPYILGTADQRVLAGKGQKVYARGHGLEVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQIMVFKTFDQLSYAYVLESELPIKVGAGIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=436958 HGD77_RS14545 WP_005105146.1 3010640..3011794(+) (tsaP) [Acinetobacter sp. NEB149]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTTGCCGTCTGTGT
TGGCGTCAGTATGGGGACCATTCATTCTGCCGAGGCAGCACCTGCACGCAACGTCAATCCACCGGCATTAAAAGCCAATG
CACCGAACGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATCTCGAAACGCTTCCTGAAAAATCCGGTACGTTGG
CCGGAAATCTGGGCCAGTAATAAGCACGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGCTGATGTGTGATTA
CCAAGGCCGTCCGATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGTATTATCAGCCGCTATCTTGGCAGTACTTCTC
TGCAACCCCAGATTCGCGTTGAATCTTTAAATAATACGATTCCAGTGATTCCGCTTGAGCATATCAAGCAGTGGCTAGAA
CGCTATACCCTTCTGGCGCCTGATTCAGTTCAAGGTACGCCATATATCCTCGGAACTGCAGATCAGCGCGTACTGGCAGG
CAAAGGCCAGAAAGTTTATGCACGTGGTCACGGTCTGGAAGTTGGCCAACGCTATGCGGTGTATCGTGAAGCTGAACCGT
ATGTATTTACGGATGCAAACGGCAAGAAATATACAGCTGCACTCGAACTGCAACAAGTGGCATCTGGTATTGCGGTACGT
GGCGAAGGTGATGTGACCACACTTGAACTGACAGATAGTTACAATGCTGAAGTCCGTCGTGGTGATCGCGTCTTGCCTGA
ATATGATCCAATGTTACCAACCCTGTTCTATCCAACCAATGCAGAAAATATTGCTGCCGGTGGCCAGATTGTTCGCGTAT
TGGGATCAATTGGTACTGCAGCACGTCATAGTGTGGTCACCATTGATCGTGGTACGGCACATGGAGTTCAGACGGGTCAT
GTCTTTAGTGTGAATCAAAAAGGTGAAGTGGTCACTGATCCTAAAACTAAAGAACGTGTGCAATTGCCAGGTGAGCGTAT
TGGCCAGATCATGGTATTTAAAACCTTCGATCAATTAAGCTATGCTTATGTGCTGGAAAGTGAATTACCAATCAAGGTTG
GTGCAGGAATTCAAGCACCTCTTTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.052

100

0.682