Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HGD77_RS14160 Genome accession   NZ_CP051208
Coordinates   2927503..2928927 (+) Length   474 a.a.
NCBI ID   WP_005263946.1    Uniprot ID   N9NY87
Organism   Acinetobacter sp. NEB149     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2922503..2933927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGD77_RS14140 (HGD77_14145) thrC 2922787..2923926 (+) 1140 WP_004281061.1 threonine synthase -
  HGD77_RS14145 (HGD77_14150) - 2923984..2925045 (-) 1062 WP_138743173.1 serine hydrolase -
  HGD77_RS14150 (HGD77_14155) - 2925265..2925900 (+) 636 WP_004281059.1 response regulator -
  HGD77_RS14155 (HGD77_14160) - 2925923..2927488 (+) 1566 Protein_2734 sensor histidine kinase -
  HGD77_RS14160 (HGD77_14165) pilR 2927503..2928927 (+) 1425 WP_005263946.1 sigma-54-dependent transcriptional regulator Regulator
  HGD77_RS14165 (HGD77_14170) - 2928928..2930100 (-) 1173 WP_005263947.1 S41 family peptidase -
  HGD77_RS14170 (HGD77_14175) gpmI 2930131..2931678 (-) 1548 WP_168730897.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  HGD77_RS14175 (HGD77_14180) lptG 2931803..2932873 (-) 1071 WP_168730898.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53492.66 Da        Isoelectric Point: 6.0371

>NTDB_id=436957 HGD77_RS14160 WP_005263946.1 2927503..2928927(+) (pilR) [Acinetobacter sp. NEB149]
MNGEQQPLVLLVDDEEDLCTLMQMSLLRMGIRTHIAHRLEDAKKCLANHQYDACLTDLNLPDGNGLELLDWIGSLYPALP
VAVLTAYGNMEIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYSHNNPNEALEHKMLIGQSLPIQQLRITLQKIA
RSQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLIQSAHGGSLFL
DEIAELPLSMQVKLLRAVQEKRIRPLGSDTEIDVDFRVISATHQDLEALVQQGKFRQDLYFRIHVMDLTLPPLRERGQDI
LLLAEHFIQKICQEWGIPNKKLTERSKEFLLGQYYPGNVRELRNIMERAITLSDEERIDLQHLQSAPLRQALNSPQEMNT
LTSEIIATETLIAPKKLPEEGLELYLEKVEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=436957 HGD77_RS14160 WP_005263946.1 2927503..2928927(+) (pilR) [Acinetobacter sp. NEB149]
ATGAATGGGGAACAACAACCACTGGTGCTTTTGGTGGATGATGAGGAAGATTTGTGTACCCTCATGCAAATGTCATTGCT
GCGCATGGGAATTCGTACGCACATTGCCCACCGTTTGGAAGATGCTAAAAAATGCCTTGCCAATCATCAATATGATGCCT
GTCTGACTGACCTAAACCTGCCCGATGGCAATGGTTTGGAGTTACTGGACTGGATTGGCAGCCTCTATCCGGCACTTCCG
GTCGCAGTTCTGACCGCCTATGGCAACATGGAAATCGCCATTGCTGCGCTCAAAGCCGGGGCCTTTGATTTTGTCAGCAA
ACCGATCAATCAGAAACATCTGGAACAACTCTTACAAAAAGCCCTGAATAAACCGGTGGATTATTCGCATAATAATCCAA
ATGAAGCGCTTGAACATAAAATGCTGATTGGACAATCCCTGCCGATCCAGCAACTACGTATTACCTTACAAAAAATTGCC
CGATCCCAAGCACCGGTTTTTATCACTGGTGAATCGGGAACAGGTAAAGAAGTCGTGGCCAATCTGGTCCATCGCCTGAG
TAACCGCAATGAAGGTCCTTTTATTGCGATTAACTGTGGCGCCATTCCGACTGAGTTGATGGAAAGCGAACTGTTTGGGC
ATAAGAAAGGCAGCTTTACCGGCGCTGCTCAGGACAAACAGGGACTGATTCAATCTGCCCATGGTGGCAGTCTGTTTCTG
GATGAAATTGCAGAATTACCGCTTTCTATGCAGGTCAAATTGTTACGTGCCGTACAGGAAAAACGTATTCGTCCACTCGG
TTCGGATACCGAAATTGATGTGGATTTCCGTGTGATCAGTGCCACGCATCAGGATCTGGAAGCCTTGGTGCAACAAGGCA
AATTCCGTCAGGATTTATATTTCCGTATTCATGTAATGGATCTGACTTTACCGCCATTACGTGAACGCGGTCAGGATATT
CTGCTATTGGCCGAACATTTCATTCAGAAGATTTGCCAGGAATGGGGCATTCCCAATAAAAAACTGACCGAACGTAGCAA
AGAGTTCTTATTGGGACAATATTATCCAGGTAATGTGCGTGAATTGCGTAATATTATGGAACGCGCGATTACTTTAAGTG
ATGAAGAGCGGATTGATCTTCAGCATTTGCAGAGTGCACCGCTGCGTCAGGCGCTAAACAGCCCTCAGGAGATGAATACG
CTCACCAGCGAGATCATTGCGACCGAAACCCTGATTGCACCTAAAAAGCTGCCTGAAGAGGGTCTAGAACTATATTTGGA
AAAGGTCGAGAAAGAAATTTTACTGAATGCGCTGAATCTGACCCATTGGAACCGGACACTGGCCGCCAAAAAACTCGGCA
TGTCATTCCGTTCCCTGCGCTATCGTTTGAAAAAGTTCGGACTGGATACCGAAGAAGACGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-308)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9NY87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.262

100

0.743
  pilR Pseudomonas aeruginosa PAK

49.241

97.257

0.479