Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   HF084_RS07880 Genome accession   NZ_CP051191
Coordinates   1552135..1552704 (-) Length   189 a.a.
NCBI ID   WP_000872883.1    Uniprot ID   A0AAN1ZPK7
Organism   Staphylococcus aureus strain NGA102     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1547135..1557704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF084_RS07840 (HF084_02780) - 1547609..1548217 (-) 609 WP_000020303.1 class I SAM-dependent methyltransferase -
  HF084_RS07845 (HF084_02775) rplL 1548392..1548760 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  HF084_RS07850 (HF084_02770) rplJ 1548803..1549303 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  HF084_RS07855 (HF084_02765) rplA 1549575..1550267 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  HF084_RS07860 (HF084_02760) rplK 1550475..1550897 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  HF084_RS07865 (HF084_02755) nusG 1551078..1551626 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  HF084_RS07870 (HF084_02750) secE 1551639..1551821 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  HF084_RS07875 (HF084_02745) rpmG 1551877..1552020 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  HF084_RS07880 (HF084_02740) sigH 1552135..1552704 (-) 570 WP_000872883.1 RNA polymerase sigma factor Regulator
  HF084_RS07885 (HF084_02735) - 1552785..1553309 (-) 525 WP_000664732.1 NYN domain-containing protein -
  HF084_RS07890 (HF084_02730) rlmB 1553309..1554055 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  HF084_RS07895 (HF084_02725) - 1554063..1554467 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  HF084_RS07900 (HF084_02720) cysS 1554460..1555860 (-) 1401 WP_000631962.1 cysteine--tRNA ligase -
  HF084_RS07905 (HF084_02715) cysE 1555844..1556491 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23070.93 Da        Isoelectric Point: 9.6015

>NTDB_id=436797 HF084_RS07880 WP_000872883.1 1552135..1552704(-) (sigH) [Staphylococcus aureus strain NGA102]
MKYDLTTQDSTIKRSNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=436797 HF084_RS07880 WP_000872883.1 1552135..1552704(-) (sigH) [Staphylococcus aureus strain NGA102]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAGCAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTTATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979