Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   HF084_RS05610 Genome accession   NZ_CP051191
Coordinates   1111977..1112963 (-) Length   328 a.a.
NCBI ID   WP_000959285.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1106977..1117963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF084_RS05585 (HF084_05030) - 1107237..1107584 (-) 348 WP_001242102.1 hypothetical protein -
  HF084_RS05590 (HF084_05025) - 1107770..1108363 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  HF084_RS05595 (HF084_05020) - 1108467..1108832 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  HF084_RS05600 (HF084_05015) yjbH 1108855..1109661 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  HF084_RS05605 (HF084_05010) pepF 1110121..1111929 (-) 1809 WP_000082731.1 oligoendopeptidase F -
  HF084_RS05610 (HF084_05005) coiA 1111977..1112963 (-) 987 WP_000959285.1 competence protein CoiA family protein Machinery gene
  HF084_RS05615 (HF084_05000) mecA 1113084..1113803 (-) 720 WP_001217728.1 adaptor protein MecA -
  HF084_RS05620 (HF084_04995) spxA 1114174..1114569 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  HF084_RS05625 (HF084_04990) trpS 1114864..1115853 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  HF084_RS05630 (HF084_04985) opp4C 1115895..1116776 (-) 882 WP_103148465.1 oligopeptide ABC transporter permease -
  HF084_RS05635 (HF084_04980) opp4B 1116788..1117750 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38811.37 Da        Isoelectric Point: 9.5840

>NTDB_id=436791 HF084_RS05610 WP_000959285.1 1111977..1112963(-) (coiA) [Staphylococcus aureus strain NGA102]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQTMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=436791 HF084_RS05610 WP_000959285.1 1111977..1112963(-) (coiA) [Staphylococcus aureus strain NGA102]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAACAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTTGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.171

100

0.982
  coiA Staphylococcus aureus N315

98.171

100

0.982