Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   INP93_RS05060 Genome accession   NZ_CP063121
Coordinates   1024671..1025282 (+) Length   203 a.a.
NCBI ID   WP_049366387.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C130_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1019671..1030282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP93_RS05035 (INP93_05035) - 1020918..1022186 (+) 1269 WP_197544326.1 NRAMP family divalent metal transporter -
  INP93_RS05040 (INP93_05040) nudB 1022288..1022746 (+) 459 WP_197544327.1 dihydroneopterin triphosphate diphosphatase -
  INP93_RS05045 (INP93_05045) - 1022796..1023536 (+) 741 WP_005696686.1 YebC/PmpR family DNA-binding transcriptional regulator -
  INP93_RS05050 (INP93_05050) - 1023554..1023988 (+) 435 WP_049372933.1 hypothetical protein -
  INP93_RS05055 (INP93_05055) ruvC 1024040..1024612 (+) 573 WP_005697069.1 crossover junction endodeoxyribonuclease RuvC -
  INP93_RS05060 (INP93_05060) ruvA 1024671..1025282 (+) 612 WP_049366387.1 Holliday junction branch migration protein RuvA Machinery gene
  INP93_RS05065 (INP93_05065) ruvB 1025296..1026303 (+) 1008 WP_111326582.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  INP93_RS05070 (INP93_05070) - 1026359..1026670 (-) 312 WP_049366385.1 DUF5339 domain-containing protein -
  INP93_RS05075 (INP93_05075) - 1027130..1028695 (+) 1566 WP_070868773.1 cytochrome ubiquinol oxidase subunit I -
  INP93_RS05080 (INP93_05080) cydB 1028710..1029849 (+) 1140 WP_197544328.1 cytochrome d ubiquinol oxidase subunit II -
  INP93_RS05085 (INP93_05085) - 1029861..1029959 (+) 99 WP_101494276.1 cytochrome bd oxidase small subunit, CydX/CbdX family -
  INP93_RS05090 (INP93_05090) ybgE 1029962..1030249 (+) 288 WP_014064910.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22524.32 Da        Isoelectric Point: 6.7418

>NTDB_id=436759 INP93_RS05060 WP_049366387.1 1024671..1025282(+) (ruvA) [Haemophilus parainfluenzae strain M1C130_2]
MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKTAERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSA
DEAIAALIALGYKPTDAEKMVKKVAKADLTSEQLIREALKAAL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=436759 INP93_RS05060 WP_049366387.1 1024671..1025282(+) (ruvA) [Haemophilus parainfluenzae strain M1C130_2]
ATGATCGGTCGTTTAAAAGGCATCTTATTAGAAAAACAACCTCCTGAAATTTTGCTTGATGTACAAGGCGTTGGTTACGA
ATTATTGTTACCAATGACCAGTTTTTATGACTTACCTGAAATCGGGCAAGAAACCACATTATTTACTCATCTTGTTGTGC
GTGAAGATGCTCATCTTCTTTTTGGATTTGCCCAAAAAACTGACCGCACTTTATTCCGTGAATTAATTAAAACCAATGGT
GTCGGTCCTAAATTGGCACTCGCAATTTTATCAGCTATGTCAGTAGAGCAGTTTGCTTATGCTATTGAGCGAGAAGAACT
GTCAAAATTAGTTAAAATTCCTGGTGTGGGCAAGAAAACGGCTGAACGTTTATTGGTGGAGTTAAAAGGGAAGTTTAAGG
ATGTTCGTCAAAGTGATTTCTTTGTGGAGAGCAAACATATTCCTTCAACTTCAGAATTACGCCAAGCAGAAAGCTCAGCA
GATGAAGCGATTGCTGCATTGATTGCATTAGGCTATAAACCAACAGATGCTGAAAAAATGGTGAAAAAAGTGGCTAAAGC
AGACTTAACCAGTGAGCAATTAATTCGCGAAGCTTTAAAAGCCGCGTTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(160-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.915

100

0.394