Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | INP93_RS05065 | Genome accession | NZ_CP063121 |
| Coordinates | 1025296..1026303 (+) | Length | 335 a.a. |
| NCBI ID | WP_111326582.1 | Uniprot ID | - |
| Organism | Haemophilus parainfluenzae strain M1C130_2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1020296..1031303
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| INP93_RS05035 (INP93_05035) | - | 1020918..1022186 (+) | 1269 | WP_197544326.1 | NRAMP family divalent metal transporter | - |
| INP93_RS05040 (INP93_05040) | nudB | 1022288..1022746 (+) | 459 | WP_197544327.1 | dihydroneopterin triphosphate diphosphatase | - |
| INP93_RS05045 (INP93_05045) | - | 1022796..1023536 (+) | 741 | WP_005696686.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| INP93_RS05050 (INP93_05050) | - | 1023554..1023988 (+) | 435 | WP_049372933.1 | hypothetical protein | - |
| INP93_RS05055 (INP93_05055) | ruvC | 1024040..1024612 (+) | 573 | WP_005697069.1 | crossover junction endodeoxyribonuclease RuvC | - |
| INP93_RS05060 (INP93_05060) | ruvA | 1024671..1025282 (+) | 612 | WP_049366387.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| INP93_RS05065 (INP93_05065) | ruvB | 1025296..1026303 (+) | 1008 | WP_111326582.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| INP93_RS05070 (INP93_05070) | - | 1026359..1026670 (-) | 312 | WP_049366385.1 | DUF5339 domain-containing protein | - |
| INP93_RS05075 (INP93_05075) | - | 1027130..1028695 (+) | 1566 | WP_070868773.1 | cytochrome ubiquinol oxidase subunit I | - |
| INP93_RS05080 (INP93_05080) | cydB | 1028710..1029849 (+) | 1140 | WP_197544328.1 | cytochrome d ubiquinol oxidase subunit II | - |
| INP93_RS05085 (INP93_05085) | - | 1029861..1029959 (+) | 99 | WP_101494276.1 | cytochrome bd oxidase small subunit, CydX/CbdX family | - |
| INP93_RS05090 (INP93_05090) | ybgE | 1029962..1030249 (+) | 288 | WP_014064910.1 | cyd operon protein YbgE | - |
| INP93_RS05095 (INP93_05095) | ybgC | 1030321..1030749 (+) | 429 | WP_178162665.1 | tol-pal system-associated acyl-CoA thioesterase | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37135.52 Da Isoelectric Point: 4.7327
>NTDB_id=436760 INP93_RS05065 WP_111326582.1 1025296..1026303(+) (ruvB) [Haemophilus parainfluenzae strain M1C130_2]
MIEADRIISSQAKIDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE
MIEADRIISSQAKIDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE
Nucleotide
Download Length: 1008 bp
>NTDB_id=436760 INP93_RS05065 WP_111326582.1 1025296..1026303(+) (ruvB) [Haemophilus parainfluenzae strain M1C130_2]
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATTGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAACT
TTTAGCCGACTATGTGGGACAGCCACAAGTGCGAGAGCAGATGGATATTTTCATTAAGGCCGCAAAGTTACGTCAAGATG
CCTTAGATCATCTGTTGATCTTTGGTCCTCCAGGTTTAGGAAAAACAACGCTAGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGCACAACATCAGGTCCTGTGCTTGAAAAAGCTGGCGATTTAGCGGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTATTCATTGATGAAATTCACCGTCTTTCTCCTGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGCTGGATATTATGATTGGTGAAGGGCCAGCAGCACGTTCAATTAAATTGGACTTGCCACCTTTCACATTAATTGGCGCA
ACAACTCGGGCAGGTTCGTTAACTTCGCCATTACGCGATCGTTTTGGGATTGTTCAGCGTTTAGAATTTTATTCCGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCCGCTTTTGAAGTCGCTC
GTCGTTCACGTGGTACGCCTCGTATTGCAAACCGTTTATTACGTCGCGTTCGAGATTTTGCTGATGTGCGTAATGATGGC
ATTATTTCGGCAGACATTGCTAAACAAGCGCTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTACTTAGATAGAAA
ATTACTTACCGCTGTGATTGAACGTTTTGATGGTGGTCCAGTTGGATTAGATAACTTGGCGGCGGCAATAGGTGAAGAAC
GAGACACTATAGAAGATGTATTAGAACCTTACTTGATTCAACAAGGCTTTTTGCAACGTACGCCTCGAGGTAGAATTGCG
ACTTCATTAACTTATCGACACTTTGGACTTCAGAAGCCATCAGAATAA
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATTGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAACT
TTTAGCCGACTATGTGGGACAGCCACAAGTGCGAGAGCAGATGGATATTTTCATTAAGGCCGCAAAGTTACGTCAAGATG
CCTTAGATCATCTGTTGATCTTTGGTCCTCCAGGTTTAGGAAAAACAACGCTAGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGCACAACATCAGGTCCTGTGCTTGAAAAAGCTGGCGATTTAGCGGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTATTCATTGATGAAATTCACCGTCTTTCTCCTGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGCTGGATATTATGATTGGTGAAGGGCCAGCAGCACGTTCAATTAAATTGGACTTGCCACCTTTCACATTAATTGGCGCA
ACAACTCGGGCAGGTTCGTTAACTTCGCCATTACGCGATCGTTTTGGGATTGTTCAGCGTTTAGAATTTTATTCCGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCCGCTTTTGAAGTCGCTC
GTCGTTCACGTGGTACGCCTCGTATTGCAAACCGTTTATTACGTCGCGTTCGAGATTTTGCTGATGTGCGTAATGATGGC
ATTATTTCGGCAGACATTGCTAAACAAGCGCTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTACTTAGATAGAAA
ATTACTTACCGCTGTGATTGAACGTTTTGATGGTGGTCCAGTTGGATTAGATAACTTGGCGGCGGCAATAGGTGAAGAAC
GAGACACTATAGAAGATGTATTAGAACCTTACTTGATTCAACAAGGCTTTTTGCAACGTACGCCTCGAGGTAGAATTGCG
ACTTCATTAACTTATCGACACTTTGGACTTCAGAAGCCATCAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
63.526 |
98.209 |
0.624 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.589 |
97.313 |
0.57 |
| ruvB | Streptococcus pneumoniae R6 |
58.589 |
97.313 |
0.57 |
| ruvB | Streptococcus pneumoniae D39 |
58.589 |
97.313 |
0.57 |
| ruvB | Helicobacter pylori 26695 |
55.921 |
90.746 |
0.507 |
| ruvB | Synechocystis sp. PCC 6803 |
53.994 |
93.433 |
0.504 |