Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HEP74_RS14575 Genome accession   NZ_CP051190
Coordinates   3525624..3527009 (-) Length   461 a.a.
NCBI ID   WP_185813490.1    Uniprot ID   -
Organism   Xanthomonas sp. SS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3520624..3532009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP74_RS14555 (HEP74_02873) - 3521472..3522776 (+) 1305 WP_185813486.1 histidine-type phosphatase -
  HEP74_RS14560 (HEP74_02874) - 3522889..3524193 (+) 1305 WP_185813487.1 jacalin-like lectin -
  HEP74_RS14565 (HEP74_02875) - 3524354..3524965 (-) 612 WP_185813488.1 hypothetical protein -
  HEP74_RS14570 (HEP74_02876) - 3525154..3525540 (-) 387 WP_185813489.1 DUF805 domain-containing protein -
  HEP74_RS14575 (HEP74_02877) radA 3525624..3527009 (-) 1386 WP_185813490.1 DNA repair protein RadA Machinery gene
  HEP74_RS14580 (HEP74_02878) - 3527310..3527981 (-) 672 WP_221893126.1 hypothetical protein -
  HEP74_RS14585 (HEP74_02879) - 3528200..3530089 (-) 1890 WP_185813492.1 tetratricopeptide repeat protein -
  HEP74_RS14590 (HEP74_02880) cyoD 3530282..3530617 (-) 336 WP_185813493.1 cytochrome o ubiquinol oxidase subunit IV -
  HEP74_RS14595 (HEP74_02881) cyoC 3530617..3531243 (-) 627 WP_185813494.1 cytochrome o ubiquinol oxidase subunit III -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48411.60 Da        Isoelectric Point: 7.0285

>NTDB_id=436760 HEP74_RS14575 WP_185813490.1 3525624..3527009(-) (radA) [Xanthomonas sp. SS]
MAKAKTAYVCGDCGAEYTKWQGQCTECGAWNSLSEIVLESASAAKAPAAARRSGWAGKTEAPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMASTLPVLYVTGEESLAQVAGRAVRLDLPLDGLNALAETGI
EQILQQASAAQPKLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGSSANQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGILVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDKPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGVVKGMEVIAVERLSQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=436760 HEP74_RS14575 WP_185813490.1 3525624..3527009(-) (radA) [Xanthomonas sp. SS]
ATGGCAAAAGCGAAAACGGCCTATGTGTGCGGCGACTGCGGCGCCGAGTACACCAAATGGCAAGGCCAGTGCACCGAGTG
CGGGGCGTGGAATTCGCTGAGCGAGATCGTGCTGGAAAGCGCGTCGGCGGCGAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGACCGAGGCGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAATTCGACCGGGTGCTCGGCGGCGGCCTGGTCGAAGGCGCGGTGGTGCTGATCGGCGGCGATCCGGGCAT
CGGCAAGTCGACCCTGCTGCTGCAGGCGCTGGCCAAGATGGCCAGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGCCCAGGTCGCCGGCCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAACAGATCCTGCAGCAGGCCAGCGCGGCCCAGCCCAAGCTGATCGTGGCCGACTCGGTGCAGACCCTGTGGACCGAGTC
GCTGACCGCCGCGCCCGGCTCGGTCAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTACGCCAAGGAGACCGGCA
CCGCGGTGTTCCTGGTCGGCCACGTGACCAAGGAAGGCGGTATCGCCGGGCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTATTTCGAGGGCGAGAGCGGCAGCCGTTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTGTCCAATCCGTCGGCGATCTTCCTGTCCGGCAGCAGCG
CCAACCAGCCCGGCAGCTGCGTGATGGTGACGCGCGAAGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCGCTGGTCGAT
GCCTCGCCGCTGTCCAATCCGCGGCGGGTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGTTGGCGGTGCTGCA
TCGGCACGGCGGCATCCTGGTCGGCGACCAGGATGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGATCTGCCGGTGCTGTTGGCGGTGCTGTCCTCGCTGCGCGACAAGCCGCTGGCGGAGAAGACCATCGCCTTCGGCGAG
GTCGGGCTGTCCGGCGAGATCCGCCCGGTGCCCAACGGCGAGGACCGGCTGCGCGAAGCGGCCACGCACGGTTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGCGTGGTCAAGGGCATGGAAGTGATCGCGGTGGAGCGCCTGTCGC
AGGCGCTGGAGGCGGCGAGCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(88-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.486
  radA Streptococcus mitis SK321

44.662

99.566

0.445
  radA Streptococcus pneumoniae D39

44.201

99.132

0.438
  radA Streptococcus pneumoniae TIGR4

44.201

99.132

0.438
  radA Streptococcus mitis NCTC 12261

44.201

99.132

0.438
  radA Streptococcus pneumoniae R6

44.201

99.132

0.438
  radA Streptococcus pneumoniae Rx1

44.201

99.132

0.438