Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HF888_RS16035 Genome accession   NZ_CP051183
Coordinates   3456363..3456743 (-) Length   126 a.a.
NCBI ID   WP_007016687.1    Uniprot ID   Q1MZ10
Organism   Bermanella marisrubri strain RED65     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3451363..3461743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF888_RS16015 (HF888_16015) - 3452334..3453194 (-) 861 WP_007016691.1 CheR family methyltransferase -
  HF888_RS16020 (HF888_16020) - 3453208..3455241 (-) 2034 WP_007016690.1 methyl-accepting chemotaxis protein -
  HF888_RS16025 (HF888_16025) - 3455395..3455922 (-) 528 WP_007016689.1 chemotaxis protein CheW -
  HF888_RS16030 (HF888_16030) pilH 3455934..3456302 (-) 369 WP_007016688.1 twitching motility response regulator PilH -
  HF888_RS16035 (HF888_16035) pilG 3456363..3456743 (-) 381 WP_007016687.1 twitching motility response regulator PilG Regulator
  HF888_RS16040 (HF888_16040) gshB 3456946..3457896 (+) 951 WP_007016686.1 glutathione synthase -
  HF888_RS16045 (HF888_16045) - 3457998..3458873 (+) 876 WP_007016685.1 energy transducer TonB -
  HF888_RS16050 (HF888_16050) - 3458903..3459460 (+) 558 WP_007016684.1 YqgE/AlgH family protein -
  HF888_RS16055 (HF888_16055) ruvX 3459453..3459917 (+) 465 WP_007016683.1 Holliday junction resolvase RuvX -
  HF888_RS16060 (HF888_16060) pyrR 3459945..3460466 (+) 522 WP_007016682.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HF888_RS16065 (HF888_16065) - 3460463..3461446 (+) 984 WP_007016681.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13957.18 Da        Isoelectric Point: 7.8214

>NTDB_id=436707 HF888_RS16035 WP_007016687.1 3456363..3456743(-) (pilG) [Bermanella marisrubri strain RED65]
MADNFESIKVMVIDDSKTIRRTAETLLKKVGCSVITATDGFDALAKIADNQPNIIFVDIMMPRLDGYQTCALIKNNSNFK
DTPVVMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIRDHVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=436707 HF888_RS16035 WP_007016687.1 3456363..3456743(-) (pilG) [Bermanella marisrubri strain RED65]
ATGGCGGATAATTTTGAAAGCATTAAGGTGATGGTAATCGATGATAGTAAAACCATACGCCGCACCGCTGAGACCTTATT
AAAGAAAGTCGGATGTAGTGTAATTACCGCCACAGACGGCTTTGATGCTTTGGCAAAGATTGCCGATAACCAACCTAATA
TCATTTTTGTCGATATCATGATGCCTCGACTCGATGGCTATCAAACCTGTGCTTTGATCAAAAATAATTCTAATTTTAAA
GACACGCCAGTGGTTATGTTGTCCAGTAAGGACGGCCTATTTGATAAGGCCAAGGGCCGAATTGTAGGTTCAGATCAGTA
TCTGACTAAGCCATTCAGTAAAGAAGAGTTATTAGGAGCTATCCGCGACCACGTAAAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1MZ10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

99.206

0.754
  vicR Streptococcus mutans UA159

40.678

93.651

0.381