Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   INP95_RS03550 Genome accession   NZ_CP063117
Coordinates   735296..735838 (+) Length   180 a.a.
NCBI ID   WP_070592526.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 730296..740838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS03530 (INP95_03530) - 730328..731173 (-) 846 WP_197560912.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP95_RS09935 - 731240..731932 (-) 693 Protein_688 penicillin-binding protein 1A -
  INP95_RS03535 (INP95_03535) - 732001..733852 (-) 1852 Protein_689 penicillin-binding protein 1A -
  INP95_RS03540 (INP95_03540) comA 733952..734800 (+) 849 WP_070776022.1 pilus assembly protein PilM Machinery gene
  INP95_RS03545 (INP95_03545) comB 734787..735299 (+) 513 WP_070592528.1 PilN domain-containing protein Machinery gene
  INP95_RS03550 (INP95_03550) comC 735296..735838 (+) 543 WP_070592526.1 competence protein ComC Machinery gene
  INP95_RS03555 (INP95_03555) - 735838..736221 (+) 384 WP_049385075.1 pilus assembly protein PilP -
  INP95_RS03560 (INP95_03560) comE 736223..737605 (+) 1383 WP_049385074.1 type IV pilus secretin PilQ Machinery gene
  INP95_RS03565 (INP95_03565) - 737625..738314 (+) 690 WP_070592520.1 ComF family protein -
  INP95_RS03570 (INP95_03570) nfuA 738430..739014 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  INP95_RS03575 (INP95_03575) comM 739054..740583 (-) 1530 WP_197560914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21095.17 Da        Isoelectric Point: 6.3363

>NTDB_id=436621 INP95_RS03550 WP_070592526.1 735296..735838(+) (comC) [Haemophilus parainfluenzae strain M1C142_1]
MRNLINEIVQKSAQSWFGRWLRLPQMVHAAFWLSALSAVIFLPVFRYVENSNERHRLDAELSLQQQEWEKQEKILQTLRQ
KSDSRQLSPELANSVLPINQHVQALLNGRLRALDLRWDFSQHTLFHLSLQGYFVDLQQFLIALLSDVPTLSLTQLNIEKL
DEEENASITCELIFQLNKDK

Nucleotide


Download         Length: 543 bp        

>NTDB_id=436621 INP95_RS03550 WP_070592526.1 735296..735838(+) (comC) [Haemophilus parainfluenzae strain M1C142_1]
ATGAGAAACCTTATCAACGAGATCGTTCAAAAAAGTGCGCAAAGTTGGTTTGGGCGATGGCTTCGATTACCTCAAATGGT
CCATGCTGCCTTTTGGTTGAGTGCATTAAGTGCGGTCATCTTTTTACCTGTTTTTCGTTACGTTGAAAACAGTAATGAAC
GACATCGACTTGACGCAGAATTGAGTTTGCAACAACAAGAGTGGGAGAAACAGGAAAAGATTTTACAAACCTTAAGACAA
AAGTCAGACAGCCGACAACTTTCTCCAGAATTGGCTAATTCTGTGTTGCCGATAAATCAGCATGTGCAGGCGTTGTTAAA
TGGGCGACTTCGAGCGTTGGATTTGCGTTGGGATTTTTCTCAACATACTTTGTTCCATTTGTCGTTACAAGGCTATTTTG
TCGATTTACAGCAATTTTTGATCGCACTTTTAAGCGATGTTCCTACACTTTCGTTAACGCAATTAAACATTGAAAAATTA
GATGAAGAGGAAAATGCTTCTATTACATGTGAGTTAATTTTCCAATTAAATAAGGATAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae Rd KW20

41.104

90.556

0.372
  comC Haemophilus influenzae 86-028NP

41.104

90.556

0.372