Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   INP95_RS03545 Genome accession   NZ_CP063117
Coordinates   734787..735299 (+) Length   170 a.a.
NCBI ID   WP_070592528.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 729787..740299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS03525 (INP95_03525) psiE 729876..730292 (+) 417 WP_049365746.1 phosphate-starvation-inducible protein PsiE -
  INP95_RS03530 (INP95_03530) - 730328..731173 (-) 846 WP_197560912.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP95_RS09935 - 731240..731932 (-) 693 Protein_688 penicillin-binding protein 1A -
  INP95_RS03535 (INP95_03535) - 732001..733852 (-) 1852 Protein_689 penicillin-binding protein 1A -
  INP95_RS03540 (INP95_03540) comA 733952..734800 (+) 849 WP_070776022.1 pilus assembly protein PilM Machinery gene
  INP95_RS03545 (INP95_03545) comB 734787..735299 (+) 513 WP_070592528.1 PilN domain-containing protein Machinery gene
  INP95_RS03550 (INP95_03550) comC 735296..735838 (+) 543 WP_070592526.1 competence protein ComC Machinery gene
  INP95_RS03555 (INP95_03555) - 735838..736221 (+) 384 WP_049385075.1 pilus assembly protein PilP -
  INP95_RS03560 (INP95_03560) comE 736223..737605 (+) 1383 WP_049385074.1 type IV pilus secretin PilQ Machinery gene
  INP95_RS03565 (INP95_03565) - 737625..738314 (+) 690 WP_070592520.1 ComF family protein -
  INP95_RS03570 (INP95_03570) nfuA 738430..739014 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 20275.38 Da        Isoelectric Point: 5.9196

>NTDB_id=436620 INP95_RS03545 WP_070592528.1 734787..735299(+) (comB) [Haemophilus parainfluenzae strain M1C142_1]
MLSLNLLPWRLEQHQKAFRRFMWQGLIWLACLVLIVVGLNQLNEQQGQALSQTKEKLTQITHQVHQKRIQVQQLQSNLKE
LNELTEMETEYVYRMLNLLTELPLQQGELDEFTLNAKQVVLSGMTESQQEFEEIHQFLKRHFTEVNLTKFQPVQQQLFFQ
FDIHLSELVQ

Nucleotide


Download         Length: 513 bp        

>NTDB_id=436620 INP95_RS03545 WP_070592528.1 734787..735299(+) (comB) [Haemophilus parainfluenzae strain M1C142_1]
ATGTTAAGCCTTAATCTATTGCCTTGGCGCTTAGAACAACATCAAAAGGCCTTTCGTCGTTTTATGTGGCAAGGTTTAAT
TTGGCTAGCTTGTTTAGTTTTGATTGTTGTTGGATTGAACCAACTCAATGAACAACAAGGGCAAGCCCTAAGCCAGACAA
AAGAAAAACTGACACAAATTACTCATCAAGTCCATCAGAAACGCATTCAAGTTCAGCAACTACAAAGTAACTTAAAAGAA
CTGAATGAGCTGACAGAAATGGAGACGGAATATGTGTATCGAATGCTTAATTTATTAACTGAGTTGCCATTACAACAAGG
TGAGTTAGATGAATTTACGCTCAATGCTAAGCAAGTTGTCCTTTCAGGCATGACAGAAAGCCAACAAGAGTTTGAAGAGA
TACATCAATTTCTCAAACGCCATTTTACAGAGGTTAACTTAACTAAGTTTCAACCAGTGCAACAGCAGTTGTTCTTTCAA
TTTGATATTCATTTATCGGAGCTTGTGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

41.358

95.294

0.394
  comB Haemophilus influenzae Rd KW20

40.741

95.294

0.388