Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HF906_RS08440 Genome accession   NZ_CP051175
Coordinates   1819008..1819787 (-) Length   259 a.a.
NCBI ID   WP_003267754.1    Uniprot ID   -
Organism   Ralstonia solanacearum strain Rs5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1814008..1824787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF906_RS08425 (HF906_08455) - 1815737..1816483 (+) 747 WP_043891931.1 hypothetical protein -
  HF906_RS08430 (HF906_08460) - 1816524..1816727 (+) 204 WP_003267750.1 DUF465 domain-containing protein -
  HF906_RS08435 (HF906_08465) - 1816806..1818938 (+) 2133 WP_003267753.1 ATP-dependent DNA helicase -
  HF906_RS08440 (HF906_08470) comL 1819008..1819787 (-) 780 WP_003267754.1 outer membrane protein assembly factor BamD Machinery gene
  HF906_RS08445 (HF906_08475) - 1819857..1820969 (+) 1113 WP_193010051.1 RluA family pseudouridine synthase -
  HF906_RS08450 (HF906_08480) pgeF 1820953..1821756 (+) 804 WP_043891933.1 peptidoglycan editing factor PgeF -
  HF906_RS08455 (HF906_08485) - 1821799..1822026 (-) 228 WP_003267759.1 hypothetical protein -
  HF906_RS08460 (HF906_08490) phaC 1822312..1824108 (+) 1797 WP_043891934.1 class I poly(R)-hydroxyalkanoic acid synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29567.20 Da        Isoelectric Point: 6.7231

>NTDB_id=436599 HF906_RS08440 WP_003267754.1 1819008..1819787(-) (comL) [Ralstonia solanacearum strain Rs5]
MAAGVACLAISACGIMPEQQDETAGWSANKLYSEAKDALDGGDYSKAVKYYEKLESRYPFGPFAQQAQIETAYANYKDGE
TAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSSQDLSERDPKAARAAYDAFKTLITRFPNSKYAPDAA
QRMQYIVNAMAEHEVQAARYYYRRGAYLAATNRAQEAIKDYDRAPAVEEALYIMMKSYEALGMKDLRDDTERIIKQNYPN
SNFMLYGQRKKEKAWYQWW

Nucleotide


Download         Length: 780 bp        

>NTDB_id=436599 HF906_RS08440 WP_003267754.1 1819008..1819787(-) (comL) [Ralstonia solanacearum strain Rs5]
ATGGCGGCGGGCGTTGCATGCCTCGCGATCTCGGCCTGCGGCATCATGCCGGAACAGCAGGACGAGACCGCAGGCTGGTC
GGCCAACAAATTATATTCGGAAGCGAAGGACGCGCTCGACGGCGGCGACTACAGCAAGGCCGTCAAGTACTACGAAAAGC
TCGAGAGCCGCTACCCGTTCGGGCCCTTTGCCCAGCAGGCCCAGATCGAAACCGCCTACGCCAACTACAAGGACGGCGAA
ACGGCCGCCGCGCTGGCCGCGGTCGATCGCTTCATCCAACTGCACCCGAATCACCCCAGCGTCGATTACGCCTACTACCT
CAAGGGCCTGATCAACTTCAACGACAACCTGGGCTGGCTCGGCCGCTTCTCCAGCCAGGACCTGAGCGAGCGCGATCCGA
AGGCCGCCCGCGCCGCCTACGATGCGTTCAAGACGCTGATCACGCGGTTCCCGAACAGCAAGTACGCGCCGGACGCCGCG
CAGCGCATGCAGTACATCGTCAACGCGATGGCCGAGCATGAAGTGCAGGCCGCCCGCTACTACTACCGCCGCGGTGCCTA
CCTGGCCGCCACCAACCGCGCACAGGAAGCCATCAAGGACTACGACCGCGCACCGGCCGTGGAAGAAGCGCTGTACATCA
TGATGAAGTCCTACGAAGCGCTGGGCATGAAAGACCTGCGCGACGACACCGAGCGCATCATCAAGCAGAACTACCCGAAC
AGCAACTTCATGCTGTACGGACAGCGCAAAAAGGAGAAGGCGTGGTACCAGTGGTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(28-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.02

98.456

0.483
  comL Neisseria gonorrhoeae MS11

47.451

98.456

0.467